Hs01895061_u1

Gene Symbol:

POU5F1P3 POU5F1 POU5F1P4

Gene Name:

POU class 5 homeobox 1 pseudogene 3

POU class 5 homeobox 1

POU class 5 homeobox 1 pseudogene 4

Gene Aliases:

OCT4-pg3, OTF3L, POU5F1L, POU5FLC12

OCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4

Oct4-pg4, POU5FLC1

Chromosome Location:

Chr.12: 8133769 - 8134852 on Build GRCh38

Chromosome Location:

Chr.6: 31164337 - 31170693 on Build GRCh38

Chromosome Location:

Chr.1: 155433180 - 155434262 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

-

-

Assay Details

Gene Symbol: POU5F1P3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_036440.1		1			130
GenBank mRNA	AF268617.1	-	1	395		130
	FM177983.1	-	1	274		130
	FM177984.1	-	1	274		130
	FM177985.1	-	1	274		130
	FM177987.1	-	1	274		130
	FM177988.1	-	1	274		130
	FM177989.1	-	1	274		130
	FM177990.1	-	1	274		130
	FM177991.1	-	1	274		130
	FM177992.1	-	1	274		130
	FM177995.1	-	1	274		130
	FM177997.1	-	1	274		130
	FM177999.1	-	1	274		130
	GU480832.1	-	1	396		130
	GU480837.1	-	1	396		130
	GU480838.1	-	1	396		130
	GU480846.1	-	1	396		130
	GU480876.1	-	1	396		130
	GU480877.1	-	1	396		130
	GU480887.1	-	1	396		130
	GU480888.1	-	1	397		130
	GU480891.1	-	1	397		130
	GU480892.1	-	1	396		130
	GU480897.1	-	1	396		130
	GU480901.1	-	1	395		130
	GU480903.1	-	1	396		130
	GU480907.1	-	1	396		130
	GU480909.1	-	1	396		130
	GU480915.1	-	1			130
	HQ122694.1	-	1			130
	HQ122722.1	-	1	396		130
	HQ122724.1	-	1	396		130
	HQ122725.1	-	1	396		130
	HQ122726.1	-	1	396		130
	HQ122728.1	-	1	396		130
	HQ122729.1	-	1	396		130
	HQ122730.1	-	1	396		130
	HQ122753.1	-	1	396		130
	HQ122754.1	-	1	396		130
	HQ122791.1	-	1	396		130
	HQ122792.1	-	1	396		130
	HQ122793.1	-	1	396		130
	HQ122794.1	-	1	396		130
	HQ122795.1	-	1	396		130
	HQ122796.1	-	1	396		130
	HQ122828.1	-	1	396		130
	HQ122829.1	-	1	396		130
	HQ122830.1	-	1	396		130
	HQ122831.1	-	1	396		130

Gene Symbol: POU5F1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_002701.5	NP_002692.2	1			130
GenBank mRNA	BC117435.1	-	1		40125986	130
	BC117437.1	-	1		40125988	130
	BQ278003.1	-				130
	CD247724.1	-	1			130
	FM177951.1	-	2			130
	FM177952.1	-	1			130
	FM177953.1	-	1			130
	FM177954.1	-	1			130
	FM177955.1	-	1			130
	FM177956.1	-	1			130
	FM177957.1	-	2			130
	FM177958.1	-	2			130
	FM177960.1	-	1			130
	FM177961.1	-	1			130
	FM177962.1	-	1			130
	FM177963.1	-	1			130
	FM177964.1	-	2			130
	FM177965.1	-	1			130
	FM177968.1	-	1			130
	GU480808.1	-	1			130
	GU480809.1	-	1			130
	GU480811.1	-	1			130
	GU480812.1	-	1			130
	GU480813.1	-	1			130
	GU480815.1	-	1			130
	GU480816.1	-	1			130
	GU480817.1	-	1			130
	GU480818.1	-	1			130
	GU480819.1	-	1			130
	GU480820.1	-	1			130
	GU480821.1	-	1			130
	GU480822.1	-	1			130
	GU480824.1	-	1			130
	GU480825.1	-	1			130
	GU480826.1	-	1			130
	GU480828.1	-	1			130
	GU480829.1	-	1			130
	GU480830.1	-	1			130
	HQ122658.1	-	1			130
	HQ122660.1	-	1			130
	HQ122661.1	-	1			130
	HQ122662.1	-	1			130
	HQ122663.1	-	1			130
	HQ122664.1	-	1			130
	HQ122665.1	-	1			130
	HQ122666.1	-	1			130
	HQ122667.1	-	1			130
	HQ122668.1	-	1			130
	HQ122669.1	-	1			130
	HQ122670.1	-	1			130
	HQ122671.1	-	1			130
	HQ122672.1	-	1			130
	HQ122673.1	-	1			130
	HQ122674.1	-	1			130
	HQ122675.1	-	1			130
	Z11898.1	-	1			130

Gene Symbol: POU5F1P4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	HQ122756.1	-	1			130
	HQ122860.1	-	1			130

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600011406.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06001521.hg.1, TC6_cox_hap2000153.hg.1, TC6_dbb_hap3000142.hg.1, TC6_mann_hap4000130.hg.1, TC6_mcf_hap5000130.hg.1, TC6_qbl_hap6000143.hg.1, TC6_ssto_hap7000125.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Homo sapiens, 1700, Inventoried, Amplicon spans exons and probe does not span exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene POU5F1P3
Click here to find siRNAs for Gene POU5F1
Click here to find siRNAs for Gene POU5F1P4

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
endodermal cell fate specification
blastocyst development
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
response to wounding
anatomical structure morphogenesis
regulation of asymmetric cell division
regulation of gene expression
somatic stem cell population maintenance
mRNA transcription from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase II promoter
negative regulation of gene silencing by miRNA

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
ubiquitin protein ligase binding
miRNA binding
sequence-specific DNA binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06017291.hg.1	TC06001521.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06017291.hg.1	ENST00000259915.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017291.hg.1	ENST00000448657.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017291.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	TC06001521.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	ENST00000259915.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	ENST00000441888.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	ENST00000448657.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	ENST00000471529.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	ENST00000512818.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06017287.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002175.hg.1	TC6_mann_hap4000130.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002175.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002175.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002175.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002316.hg.1	TC6_ssto_hap7000125.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002316.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002316.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002316.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002656.hg.1	TC6_cox_hap2000153.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002656.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002656.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002656.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002592.hg.1	TC6_dbb_hap3000142.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002592.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002592.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002592.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002632.hg.1	TC6_qbl_hap6000143.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002632.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002632.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002632.hg.1	NM_203289.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002323.hg.1	TC6_mcf_hap5000130.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002323.hg.1	NM_001173531.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002323.hg.1	NM_002701.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002323.hg.1	NM_203289.5	Refseq
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000619340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	ENST00000619340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177023.hg.1	TC0600011406.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000619340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	ENST00000619340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177024.hg.1	TC0600011406.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600177026.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177026.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177026.hg.1	ENST00000259915.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177026.hg.1	ENST00000461401.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177026.hg.1	TC0600011406.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	193216	-	-