Name: [Hs03297859_s1] [SNORA33]
Creator: Thermo Fisher Scientific
Keywords: [SNORA33] Assay, [small nucleolar RNA, H/ACA box 33] Assay

Assay Details

Gene Symbol: SNORA33
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002436.1		1	61		80
GenBank mRNA	AJ609473.1	-	1	61		80
GenBank mRNA	AK096147.1	-	1	2708		80

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AW272582.1	-	1		Chr. 6 - 132817186 - 132817564 [-] on Build GRCh38	80
GenBankmRNA	AI887274.1	-	1		Chr. 6 - 132817032 - 132817564 [-] on Build GRCh38	80
GenBankmRNA	DW441862.1	-	1	77	Chr. 6 - 132817219 - 132817439 [+] on Build GRCh38	80
GenBankmRNA	DB321463.1	-	1		Chr. 6 - 132817111 - 132817567 [-] on Build GRCh38	80
GenBankmRNA	AW103472.1	-	1		Chr. 6 - 132816968 - 132817567 [-] on Build GRCh38	80

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA, C/D box 100	SNORD100	HBII-429	-342.0	Sense	Chr. 6 - 132816802 - 132816877 on NCBI Build GRCh38
Downstream	long intergenic non-protein coding RNA 326	LINC00326	NCRNA00326	270.7kb	Sense	Chr. 6 - 133088080 - 133106578 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600009491.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06000997.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_3770	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_3769	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25285786	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25285787	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25285787	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P25285786	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05085511	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P05085510	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NR_002436_at	-	-
Affymetrix Human Gene 1.0 ST Array	8122145	-	-
Affymetrix Human Gene 1.0 ST Array	8122141	-	-
Affymetrix Human Gene 1.0 ST Array	8122143	-	-
Affymetrix Human Gene 1.0 ST Array	8122139	-	-
Affymetrix Human Gene 1.0 ST Array	8122140	-	-
Affymetrix Human Gene 1.1 ST Array	8122136	-	-
Affymetrix Human Gene 1.1 ST Array	8122144	-	-
Affymetrix Human Gene 1.1 ST Array	8122142	-	-
Affymetrix Human Genome U219 Array	11763888_PM_at	-	-
Affymetrix Human Genome U219 Array	11763888_at	-	-
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000230050.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	ENST00000484616.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	NM_001016.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	NM_001016.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	NM_001016.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	NM_001016.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009488.hg.1	NM_001016.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009491.hg.1	ENST00000363664.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009491.hg.1	NR_002436.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009490.hg.1	ENST00000408573.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009490.hg.1	NR_002435.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600009489.hg.1	ENST00000384027.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600009489.hg.1	NR_002434.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06011748.hg.1	TC06000997.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06011748.hg.1	ENST00000363664.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06011748.hg.1	NR_002436.1	Refseq
Affymetrix Human Clariom D Assay	TC0600009491.hg.1	ENST00000363664.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600009491.hg.1	NR_002436.1	Refseq
Affymetrix Human Clariom D Assay	TC0600009489.hg.1	ENST00000384027.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600009489.hg.1	NR_002434.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600165081.hg.1	ENST00000363664.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600165081.hg.1	NR_002436.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600165081.hg.1	ENST00000363664.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600165081.hg.1	NR_002436.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600165081.hg.1	TC0600009491.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0600009490.hg.1	ENST00000408573.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600009490.hg.1	NR_002435.1	Refseq

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_2096747	AK096147.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2096747	AJ609473.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1705715	-	-
HumanHT-12 V4.0 expression beadchip	ILMN_2096747	AK096147.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2096747	AJ609473.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2096747	AK096147.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2096747	AJ609473.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2096747	AK096147.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2096747	AJ609473.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina human-6 v2.0 expression beadchip	ILMN_1705715	-	-
Illumina Sentrix Human-6 v2 Expression BeadChip	4280491	-	-
Illumina HumanRef-6 v2.0 expression beadchip	ILMN_10854	-	-
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2096747	AK096147.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2096747	AJ609473.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2096747	AK096147.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2096747	AJ609473.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2096747	NR_002436.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1705715	-	-

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Genomic Map