SNORA54
Genomic Map
Back To TopAssay Details
| Gene Symbol: SNORA54 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_002982.1 | 1 | 66 | 69 | ||
| GenBank mRNA | AJ609479.1 | - | 1 | 66 | 69 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | pleckstrin homology like domain family A member 2 | PHLDA2 |
BRW1C, BWR1C, HLDA2, IPL, TSSC3 |
-34.4kb | Sense | Chr. 11 - 2928273 - 2929420 on NCBI Build GRCh38 |
| Downstream | cysteinyl-tRNA synthetase | CARS |
CARS1, CYSRS, MGC:11246 |
37.0kb | Sense | Chr. 11 - 3000922 - 3057451 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1100009821.hg.1This assay targets the same location as HTA transcript cluster(s) TC11001288.hg.1
Set Membership: |
Amplicon length less than or equal to 70
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_3989 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_3990 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605541 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002749 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605564 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605574 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002754 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002789 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002777 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002781 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605554 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605572 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605545 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002775 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412551 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002761 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412542 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002790 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002765 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002770 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002768 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605546 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605582 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605576 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412543 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002791 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605583 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605559 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412546 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412548 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605547 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002785 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605544 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605568 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605549 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002743 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002791 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002789 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605564 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412546 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002761 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605583 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002777 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605546 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605547 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605541 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605568 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412548 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605576 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605554 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605544 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412543 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002768 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605572 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605582 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412551 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002770 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002790 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605549 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605559 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002754 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16412542 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002765 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002749 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002781 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605574 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002775 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P07605545 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002785 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P28002743 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605559 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605534 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605574 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605547 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605535 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605538 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605562 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16412556 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605581 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605561 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605564 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605557 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16412554 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605549 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16412551 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605572 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605541 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605567 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16412553 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605533 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605576 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605539 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605583 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605590 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605554 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605552 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605578 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605546 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605586 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605588 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605544 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16412546 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P07605571 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_002982_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 7945802 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 7945801 | - | - |
| Affymetrix Human Genome U219 Array | 11757163_at | - | - |
| Affymetrix Human Genome U219 Array | 11757163_PM_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | TC1100009821.hg.1 | ENST00000384281.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1100009821.hg.1 | NR_002982.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR11016357.hg.1 | ENST00000384281.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR11016357.hg.1 | NR_002982.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR11016357.hg.1 | TC11001288.hg.1 | HTA TC |
| Affymetrix Human Clariom D Assay | PSR1100174239.hg.1 | ENST00000384281.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1100174239.hg.1 | NR_002982.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1100174239.hg.1 | ENST00000384281.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1100174239.hg.1 | NR_002982.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1100174239.hg.1 | TC1100009821.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | TC1100009821.hg.1 | ENST00000384281.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1100009821.hg.1 | NR_002982.1 | Refseq |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3237035 | NR_002982.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3237035 | AJ609479.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3237035 | NR_002982.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3237035 | AJ609479.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3237035 | NR_002982.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3237035 | AJ609479.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3237035 | NR_002982.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3237035 | AJ609479.1 | human_transcriptome |
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