SCARNA6
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA6 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003006.1 | 1 | 48 | 103 | ||
| GenBank mRNA | AY077738.1 | - | 1 | 48 | 103 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | small Cajal body-specific RNA 5 | SCARNA5 | U87 | -12.7kb | Sense | Chr. 2 - 233275726 - 233276003 on NCBI Build GRCh38 |
| Downstream | S-antigen visual arrestin | SAG |
RP47, S-AG |
15.4kb | Sense | Chr. 2 - 233307663 - 233347066 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0200011127.hg.1This assay targets the same location as HTA transcript cluster(s) TC02001417.hg.1
Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3230837 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4026 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4027 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 49793 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3230837 | - | - |
| SurePrint G3 Human GE Microarray G4851A | A_33_P3230837 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966610 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093873 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093870 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966603 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093855 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093887 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093858 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966575 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966605 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966617 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093868 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093903 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093882 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093867 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093909 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966593 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093871 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966582 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093904 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966592 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093883 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966598 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093893 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966613 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093876 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093862 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394144 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966590 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093914 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966595 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093915 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093856 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966599 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093872 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394148 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093864 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966574 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966612 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966601 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966589 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093860 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966561 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966608 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093857 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093859 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966584 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966588 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966605 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966617 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966584 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966575 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966603 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093893 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966598 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093873 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093876 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093887 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093864 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966595 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093915 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966561 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966590 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966582 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966593 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093904 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966608 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966612 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093855 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966592 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093883 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966574 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093909 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966588 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093872 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394144 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093862 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093871 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093857 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093867 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093868 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093882 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966601 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966599 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966610 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093914 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093859 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093856 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394148 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093858 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093903 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966613 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093870 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093860 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966589 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966605 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966558 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966603 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966555 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966703 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966601 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966580 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966705 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966554 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966590 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966614 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966595 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966610 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966567 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966564 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966606 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966586 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394146 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966560 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966608 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394148 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966611 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394144 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966570 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966578 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966573 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966551 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966574 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966599 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966582 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966568 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966593 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966563 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966588 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966612 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003006_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8049300 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8049299 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | TC0200011127.hg.1 | ENST00000515982.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0200011127.hg.1 | NR_003006.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022564.hg.1 | TC02001417.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022564.hg.1 | ENST00000515982.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022564.hg.1 | NR_003006.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0200011127.hg.1 | ENST00000515982.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0200011127.hg.1 | NR_003006.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180237.hg.1 | ENST00000515982.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200180237.hg.1 | NR_003006.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180237.hg.1 | ENST00000515982.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200180237.hg.1 | NR_003006.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180237.hg.1 | TC0200011127.hg.1 | Clariom D TC |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A017115 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A017115 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3241869 | NR_003006.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3241869 | AY077738.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3241869 | NR_003006.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3241869 | AY077738.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3241869 | NR_003006.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3241869 | AY077738.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3241869 | NR_003006.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3241869 | AY077738.1 | human_transcriptome |
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