Name: [Hs03298717_s1] [SCARNA5]
Creator: Thermo Fisher Scientific
Keywords: [SCARNA5] Assay, [small Cajal body-specific RNA 5] Assay

Assay Details

Gene Symbol: SCARNA5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003008.2		1	56		85
GenBank mRNA	AY077737.1	-	1			85

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DW428810.1	-	1	71	Chr. 2 - 233275723 - 233275984 [+] on Build GRCh38	85
GenBankmRNA	AA559901.1	-	1		Chr. 2 - 233275738 - 233275974 [+] on Build GRCh38	85
GenBankmRNA	DW427280.1	-	1	71	Chr. 2 - 233275723 - 233275989 [+] on Build GRCh38	85

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	autophagy related 16 like 1	ATG16L1	APG16L, ATG16A, ATG16L, IBD10, WDR30		Sense	Chr. 2 - 233251571 - 233295674 on NCBI Build GRCh38
Downstream	small Cajal body-specific RNA 6	SCARNA6	U88	12.7kb	Sense	Chr. 2 - 233288676 - 233288941 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200011126.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02001416.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3363082	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4030	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4031	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	54427	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3363082	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3363082	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394132	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394137	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966524	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966470	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966508	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966480	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093801	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966472	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093826	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093834	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966515	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093780	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966514	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093830	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093789	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093779	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093783	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966504	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966507	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093805	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394135	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093792	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966475	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966483	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966474	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093787	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966520	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093815	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093797	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966496	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093829	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093778	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093772	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093808	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093814	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093823	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966484	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093802	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093790	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093795	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966496	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093830	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093787	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966515	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093808	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394132	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966474	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966524	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093802	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093783	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093789	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966484	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394137	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966504	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966480	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966483	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093778	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966514	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093772	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093779	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093815	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093814	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966470	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093790	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093805	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093797	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093795	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093780	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966475	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093792	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093829	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966520	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093823	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15394135	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093801	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966508	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093834	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P22093826	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966507	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01966472	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966601	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966507	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966508	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966469	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966465	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966586	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966519	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966590	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15394137	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966513	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966467	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966483	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966525	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966478	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966599	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966582	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966595	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966495	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15394142	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15394132	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966593	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966491	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966515	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966506	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966486	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966472	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966510	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15394133	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966489	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966493	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966511	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966480	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966474	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966503	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966476	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966487	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966516	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966524	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01966588	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NR_003008_at	-	-
Affymetrix Human Gene 1.0 ST Array	8049298	-	-
Affymetrix Human Gene 1.1 ST Array	8049297	-	-
Affymetrix Human Transcriptome Array 2.0	PSR02022562.hg.1	ENST00000516201.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02022562.hg.1	NR_003008.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02022562.hg.1	TC02001416.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0200011126.hg.1	ENST00000516201.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011126.hg.1	NR_003008.2	Refseq
Affymetrix Human Clariom D Assay	TC0200011126.hg.1	ENST00000516201.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011126.hg.1	NR_003008.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200180235.hg.1	ENST00000516201.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200180235.hg.1	NR_003008.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200180235.hg.1	TC0200011126.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200180235.hg.1	NR_003008.2	Refseq
Affymetrix Human Clariom D Assay	PSR0200180235.hg.1	ENST00000516201.1	Ensembl

Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A017114	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A017114	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3236408	NR_003008.2	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3236408	NR_003008.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3236408	NR_003008.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3236408	NR_003008.2	human_transcriptome

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