SNORD111
Genomic Map
Back To TopAssay Details
| Gene Symbol: SNORD111 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003079.1 | 1 | 48 | 88 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream |
small nucleolar RNA, C/D box 111B |
SNORD111B | MIR3647 | -8.4kb | Sense | Chr. 16 - 70529499 - 70529599 on NCBI Build GRCh38 |
| Downstream | interleukin 34 | IL34 |
C16orf77, IL-34 |
41.8kb | Sense | Chr. 16 - 70579895 - 70660682 on NCBI Build GRCh38 |
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Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1600008277.hg.1This assay targets the same location as HTA transcript cluster(s) TC16000581.hg.1
Set Membership: |
Amplicon length between 86 and 100
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4099 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637489 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096128 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096118 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096132 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096114 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637497 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096116 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637493 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637485 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637472 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637481 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637476 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637488 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637498 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16910200 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637494 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637490 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637482 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637486 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637499 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096115 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096124 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096112 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637478 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096114 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637481 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637472 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637482 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637489 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637478 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096124 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637490 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637498 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096132 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637494 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096112 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637499 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096115 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637485 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P16910200 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637476 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096128 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096116 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10096118 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637488 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637493 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637497 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30637486 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096125 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16910200 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096112 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096107 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096116 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096129 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16910198 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096127 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096120 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096114 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16910204 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096109 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096118 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096111 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096122 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10096106 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Transcriptome Array 2.0 | TC1600008277.hg.1 | ENST00000408139.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600008277.hg.1 | NR_003079.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR16008518.hg.1 | ENST00000408139.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR16008518.hg.1 | NR_003079.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR16008518.hg.1 | TC16000581.hg.1 | HTA TC |
| Affymetrix Human Clariom D Assay | TC1600008277.hg.1 | ENST00000408139.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600008277.hg.1 | NR_003079.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600162450.hg.1 | ENST00000408139.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600162450.hg.1 | NR_003079.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600162450.hg.1 | TC1600008277.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1600162450.hg.1 | NR_003079.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600162450.hg.1 | ENST00000408139.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3237039 | NR_003079.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3237039 | NR_003079.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3237039 | NR_003079.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3237039 | NR_003079.1 | human_transcriptome |
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