Name: [Hs03299045_g1] [SNHG9]
Creator: Thermo Fisher Scientific
Keywords: [SNHG9] Assay, [small nucleolar RNA host gene 9] Assay

Assay Details

Gene Symbol: SNHG9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003142.2			137		76
GenBank mRNA	CR749453.1	-		138		76

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AW958849.1	-			Chr. - - [-] on Build	76
GenBankmRNA	AV762892.1	-		116	Chr. - - [-] on Build	76
GenBankmRNA	AI830540.1	-	1 - 2		Chr. 16 - 1964959 - 1965502 [-] on Build GRCh38	76
GenBankmRNA	AI335153.1	-	1 - 2	67	Chr. 16 - 1965066 - 1965505 [+] on Build GRCh38	76
GenBankmRNA	CB110750.1	-	1 - 2	102	Chr. 16 - 1965031 - 1965508 [+] on Build GRCh38	76
GenBankmRNA	BI963236.1	-	1 - 2		Chr. 16 - 1965067 - 1965501 [-] on Build GRCh38	76
GenBankmRNA	AI862260.1	-	1 - 2	69	Chr. 16 - 1965068 - 1965501 [+] on Build GRCh38	76
GenBankmRNA	BF131329.1	-		108	Chr. - - [-] on Build	76
GenBankmRNA	BU960491.1	-	1 - 2	77	Chr. 16 - 1965059 - 1965504 [+] on Build GRCh38	76
GenBankmRNA	AW157547.1	-	1 - 2		Chr. 16 - 1965074 - 1965508 [-] on Build GRCh38	76
GenBankmRNA	AA516122.1	-	1 - 2		Chr. 16 - 1964994 - 1965509 [-] on Build GRCh38	76
GenBankmRNA	CD174859.1	-	1 - 2	129	Chr. 16 - 1965028 - 1965504 [+] on Build GRCh38	76
GenBankmRNA	BI966761.1	-	1 - 2		Chr. 16 - 1965022 - 1965504 [-] on Build GRCh38	76
GenBankmRNA	DW442228.1	-			Chr. - - [-] on Build	76
GenBankmRNA	AA357636.1	-	1 - 2		Chr. 16 - 1964979 - 1965502 [+] on Build GRCh38	76
GenBankmRNA	AI670727.1	-	1 - 2		Chr. 16 - 1964992 - 1965502 [-] on Build GRCh38	76
GenBankmRNA	DW438767.1	-	1 - 2		Chr. 16 - 1965025 - 1965499 [+] on Build GRCh38	76
GenBankmRNA	BX096205.1	-	1 - 2	173	Chr. 16 - 1964960 - 1965509 [+] on Build GRCh38	76
GenBankmRNA	BU587988.1	-			Chr. - - [-] on Build	76
GenBankmRNA	BI962931.1	-	1 - 2		Chr. 16 - 1964992 - 1965504 [+] on Build GRCh38	76
GenBankmRNA	BU849390.1	-	1 - 2	107	Chr. 16 - 1965026 - 1965504 [+] on Build GRCh38	76
GenBankmRNA	AA661893.1	-	1 - 2		Chr. 16 - 1965013 - 1965508 [+] on Build GRCh38	76
GenBankmRNA	DW437557.1	-			Chr. - - [-] on Build	76
GenBankmRNA	BI964920.1	-	1 - 2	97	Chr. 16 - 1965036 - 1965504 [+] on Build GRCh38	76
GenBankmRNA	DW441990.1	-		91	Chr. - - [-] on Build	76
GenBankmRNA	BG940943.1	-	1 - 2		Chr. 16 - 1965016 - 1965508 [-] on Build GRCh38	76
GenBankmRNA	BF217948.1	-	1 - 2		Chr. 16 - 1965016 - 1965497 [+] on Build GRCh38	76
GenBankmRNA	BU565055.1	-	1 - 2	144	Chr. 16 - 1964992 - 1965504 [+] on Build GRCh38	76

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA, H/ACA box 78	SNORA78	ACA64		Anti-sense	Chr. 16 - 1965184 - 1965310 on NCBI Build GRCh38
Downstream	ring finger protein 151	RNF151		1.3kb	Anti-sense	Chr. 16 - 1966639 - 1968975 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600006576.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16000051.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

1700

Probe spans exons

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3280965	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4114	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4113	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	45617	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3280965	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3280965	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P09888609	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P09888610	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P09888610	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P09888609	-	-
Agilent Human 1B Microarray G4111A	A_32_P84349	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P16841490	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P09888606	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P16841461	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P09888610	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P09888587	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT HG-U133+ PM Array Plate	228645_PM_at	-	-
Affymetrix Human Genome U219 Array	11763697_PM_s_at	-	-
Affymetrix Human Genome U219 Array	11763697_s_at	-	-
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000459373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	NR_003020.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16001123.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16001123.hg.1	NR_003142.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16001123.hg.1	TC16000051.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR16001122.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR16001122.hg.1	NR_003142.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16001122.hg.1	TC16000051.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000459373.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	NR_003020.1	Refseq
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	TC1600006576.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146020.hg.1	TC1600006576.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1600146013.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146013.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146013.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146013.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146013.hg.1	TC1600006576.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	ENST00000531523.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	ENST00000564014.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	NR_003142.2	Refseq
Affymetrix Human Clariom D Assay	PSR1600146015.hg.1	TC1600006576.hg.1	Clariom D TC
Human Genome U133 Plus 2.0 Array	228645_PM_at	-	-
Human Genome U133 Plus 2.0 Array	228645_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	228645_at5	-	-
Human Genome U95 Set	89811_at	-	-
Human Genome U95 Set	89811_PM_at	-	-
Human Genome U133 Set	228645_at	-	-
Human Genome U133 Set	228645_PM_at	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3238785	CR749453.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3238785	NR_003142.2	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3238785	CR749453.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3238785	NR_003142.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3238785	CR749453.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3238785	NR_003142.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3238785	CR749453.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3238785	NR_003142.2	human_transcriptome

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Catalog #	4426961
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Genomic Map