Hs03300048_s1

• Gene Symbol: LOC729603
• Gene Name: calcineurin like EF-hand protein 1 pseudogene
• Gene Aliases: -
• Chromosome Location: Chr.6: 160093082 - 160096212 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LOC729603
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003288.2		1	91		73
GenBank mRNA	AK097332.1	-	1	91		73
	BC032536.1	-	1	52		73

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BM452887.1	-		41		Chr. - - [-] on Build	73
GenBankmRNA	DA967524.1	-	1	91		Chr. 6 - 160093082 - 160093635 [+] on Build GRCh38	73

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	antisense of IGF2R non-protein coding RNA	AIRN	AIR, IGF2R-AS, IGF2R-AS1, IGF2RAS, NCRNA00088	-85.4kb	Anti-sense	Chr. 6 - 160003291 - 160007664 on NCBI Build GRCh38
Downstream	solute carrier family 22 member 1	SLC22A1	HOCT1, OCT1, oct1_cds	25.6kb	Sense	Chr. 6 - 160121789 - 160159201 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600010070.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06001153.hg.1

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	ENST00000366273.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06013761.hg.1	NR_003288.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06013761.hg.1	TC06001153.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	ENST00000366273.3	Ensembl
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Clariom D Assay	TC0600010070.hg.1	NR_003288.2	Refseq
Affymetrix Human Clariom D Assay	PSR0600168854.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600168854.hg.1	NR_003288.2	Refseq
Affymetrix Human Clariom D Assay	PSR0600168854.hg.1	TC0600010070.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600168854.hg.1	ENST00000569097.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600168854.hg.1	NR_003288.2	Refseq