Hs03309518_s1

• Gene Symbol: SNORD99
• Gene Name: small nucleolar RNA, C/D box 99
• Gene Aliases: HBII-420
• Chromosome Location: Chr.1: 28578743 - 28578822 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: SNORD99
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003077.1		1	43		73

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BU075138.1	-	1			Chr. 1 - 28578538 - 28579068 [+] on Build GRCh38	73
GenBankmRNA	CB119876.1	-	1			Chr. 1 - 28578536 - 28578892 [+] on Build GRCh38	73
GenBankmRNA	BM263047.1	-	1	454		Chr. 1 - 28578708 - 28579217 [-] on Build GRCh38	73
GenBankmRNA	AA417948.1	-	1			Chr. 1 - 28578538 - 28578950 [+] on Build GRCh38	73
GenBankmRNA	BU075449.1	-	1	325		Chr. 1 - 28578607 - 28579104 [-] on Build GRCh38	73
GenBankmRNA	BM747774.1	-	1	134		Chr. 1 - 28578538 - 28578912 [-] on Build GRCh38	73
GenBankmRNA	CA430974.1	-	1			Chr. 1 - 28578541 - 28579175 [+] on Build GRCh38	73
GenBankmRNA	BX116925.1	-	2	622		Chr. 1 - 28578631 - 28841889 [-] on Build GRCh38	73
GenBankmRNA	BU675242.1	-	1			Chr. 1 - 28578536 - 28579264 [+] on Build GRCh38	73
GenBankmRNA	AI401149.1	-	1			Chr. 1 - 28578539 - 28578934 [+] on Build GRCh38	73
GenBankmRNA	BM142620.1	-	1			Chr. 1 - 28578538 - 28579044 [+] on Build GRCh38	73

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA host gene 12	SNHG12	ASLNC04080, C1orf79, LINC00100, NCRNA00100		Sense	Chr. 1 - 28578538 - 28581854 on NCBI Build GRCh38
Downstream	small nucleolar RNA, H/ACA box 61	SNORA61	ACA61	942.0	Sense	Chr. 1 - 28579764 - 28579893 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100013482.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01002426.hg.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4097	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043230	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130327	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043231	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130326	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043230	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130326	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130327	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043231	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043230	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043231	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108545	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108546	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108543	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043236	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108524	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108541	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108526	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108528	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108536	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108538	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043232	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	TC01002426.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	NR_003077.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0100013482.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100013482.hg.1	NR_003077.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	NR_003077.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	NR_003077.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	TC0100013482.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0100013482.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100013482.hg.1	NR_003077.1	Refseq
Human Genome U95 Set	43688_at	-	-
Human Genome U95 Set	43688_PM_at	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3248703	NR_003077.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome