Name: [Hs03455216_s1] [SNHG3]
Creator: Thermo Fisher Scientific
Keywords: [SNHG3] Assay, [small nucleolar RNA host gene 3] Assay

Assay Details

Gene Symbol: SNHG3
Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002909.2			3	2147		139
RefSeq	NR_036473.1			4	2255		139
GenBank mRNA	AF075052.1	-		1	363		139
GenBank mRNA	AJ006835.1	-	LIT1315 U17HG	3	2047		139

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AA563638.1	-	1		Chr. 1 - 28510625 - 28510892 [-] on Build GRCh38	139
GenBankmRNA	BQ334417.1	-	1		Chr. 1 - 28510635 - 28511073 [-] on Build GRCh38	139
GenBankmRNA	AA705507.1	-	1		Chr. 1 - 28510597 - 28510891 [-] on Build GRCh38	139
GenBankmRNA	H46276.1	-	1		Chr. 1 - 28510432 - 28510873 [-] on Build GRCh38	139
GenBankmRNA	AI652562.1	-	1		Chr. 1 - 28508951 - 28510886 [-] on Build GRCh38	139
GenBankmRNA	AW970811.1	-			Chr. - - [-] on Build	139
GenBankmRNA	AW449599.1	-			Chr. - - [-] on Build	139
GenBankmRNA	AA704185.1	-	1		Chr. 1 - 28510444 - 28510891 [-] on Build GRCh38	139
GenBankmRNA	BQ334425.1	-	1		Chr. 1 - 28510695 - 28511119 [-] on Build GRCh38	139
GenBankmRNA	CN479181.1	-	1		Chr. 1 - 28510212 - 28510892 [-] on Build GRCh38	139
GenBankmRNA	AW629400.1	-	1		Chr. 1 - 28510502 - 28510891 [-] on Build GRCh38	139
GenBankmRNA	BX102072.1	-	1	361	Chr. 1 - 28510442 - 28510892 [+] on Build GRCh38	139

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA, H/ACA box 73B	SNORA73B	105A, E1c, RNU105A, RNU17B, U17B	-115.0	Sense	Chr. 1 - 28508558 - 28508715 on NCBI Build GRCh38
Downstream	tRNA selenocysteine 1 associated protein 1	TRNAU1AP	PRO1902, SECP43, TRSPAP1	42.1kb	Sense	Chr. 1 - 28553017 - 28578545 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100007559.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01000381.hg.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Human CGH Microarray 4x180K	41968	-	-
Agilent SurePrint G3 Human CGH Microarray 8x60K	19567	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	728909	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3280945	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_3914	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_3915	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	62063	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3280945	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3280945	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130111	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130117	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130121	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108339	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130112	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108336	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130114	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108347	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130116	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108345	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130109	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130122	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108343	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108347	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108336	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130122	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130112	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130111	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108343	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108345	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130121	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130117	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130116	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130109	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130114	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P00108339	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108347	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108366	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108318	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108364	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108360	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108367	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108336	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108370	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108323	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108325	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108327	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108329	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043193	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108344	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108357	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108342	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108320	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108333	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043207	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108362	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108335	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108331	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108332	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108337	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043194	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108321	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_14_P113587	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NR_002909_at	-	-
Affymetrix Human Gene 1.0 ST Array	7899464	-	-
Affymetrix Human Gene 1.0 ST Array	7899463	-	-
Affymetrix Human Gene 1.0 ST Array	7899465	-	-
Affymetrix Human Gene 1.0 ST Array	7899481	-	-
Affymetrix Human Gene 1.1 ST Array	7899462	-	-
Affymetrix Human Gene 1.1 ST Array	7899480	-	-
Affymetrix HT HG-U133+ PM Array Plate	215011_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	PSR01005894.hg.1	TC01000381.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01005894.hg.1	NR_002909.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01005894.hg.1	NR_036473.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01005893.hg.1	TC01000381.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR01005893.hg.1	NR_002909.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01005893.hg.1	NR_036473.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	ENST00000413987.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	ENST00000419074.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	NR_002909.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	NR_036473.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	ENST00000413987.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	ENST00000419074.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	NR_002909.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	NR_036473.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100152962.hg.1	TC0100007559.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	ENST00000413987.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	NR_002909.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	NR_036473.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	ENST00000413987.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	NR_002909.2	Refseq
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	NR_036473.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100152963.hg.1	TC0100007559.hg.1	Clariom D TC
Human Genome U133 Plus 2.0 Array	215011_at	-	-
Human Genome U133 Plus 2.0 Array	215011_PM_at	-	-
Human Genome U133A 2.0 Array	215011_at	-	-
Human Genome U133A 2.0 Array	215011_PM_at	-	-
AffymetrixPathwork Diagnostics Pathchip	pw516659	-	-
Human Genome U95 Set	33747_PM_s_at	-	-
Human Genome U95 Set	33747_s_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	215011_at7	-	-
Human Genome U133 Set	215011_at	-	-
Human Genome U133 Set	215011_PM_at	-	-

Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A018897	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A018898	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A018898	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A018897	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_2179579	CR608897.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2179579	CR596436.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2179579	BC006790.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2179579	BC012122.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2179579	AK311577.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2179579	AK311577.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2179579	CR608897.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2179579	CR596436.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2179579	BC006790.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2179579	BC012122.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2179579	AK311577.1	human_transcriptome

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Catalog #	4426961
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Genomic Map