SNORA38
Genomic Map
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| Gene Symbol: SNORA38 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_002971.1 | 1 | 95 | 111 | ||
| GenBank mRNA | AJ609474.1 | - | 1 | 95 | 111 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | proline rich coiled-coil 2A | PRRC2A |
BAT2, D6S51, D6S51E, G2 |
Sense | Chr. 6 - 31620673 - 31637780 on NCBI Build GRCh38 | |
| Downstream | microRNA 6832 | MIR6832 | hsa-mir-6832 | 10.6kb | Sense | Chr. 6 - 31633787 - 31633858 on NCBI Build GRCh38 |
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Updated Mapping Information
This assay targets the same location as HTA transcript cluster(s) TC06000375.hg.1, TC6_cox_hap2000071.hg.1, TC6_dbb_hap3000062.hg.1, TC6_mann_hap4000062.hg.1, TC6_mcf_hap5000057.hg.1, TC6_qbl_hap6000062.hg.1, TC6_ssto_hap7000058.hg.1Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_3974 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_3973 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835938 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835939 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644025 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644028 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835944 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835932 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644019 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835943 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644033 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644027 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644016 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835944 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644016 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644028 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644019 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644025 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835939 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835938 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644027 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835943 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04644033 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24835932 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644035 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644001 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643990 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644031 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644025 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644019 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643982 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644033 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644008 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643999 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15800489 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644012 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644030 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643975 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15800486 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644009 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644010 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644022 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644036 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644028 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643997 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644016 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643986 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644015 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643995 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644006 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04643978 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04644004 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_002971_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8118208 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8118207 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001086.hg.1 | TC6_cox_hap2000071.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001086.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5000901.hg.1 | TC6_mcf_hap5000057.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5000901.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7000878.hg.1 | TC6_ssto_hap7000058.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7000878.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007600.hg.1 | ENST00000363946.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001020.hg.1 | TC6_mann_hap4000062.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001020.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001067.hg.1 | TC6_qbl_hap6000062.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001067.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06003725.hg.1 | TC06000375.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR06003725.hg.1 | ENST00000363946.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06003725.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_dbb_hap3001029.hg.1 | TC6_dbb_hap3000062.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_dbb_hap3001029.hg.1 | NR_002971.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007600.hg.1 | ENST00000363946.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3244597 | AJ609474.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3244597 | NR_002971.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3244597 | AJ609474.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3244597 | NR_002971.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3244597 | AJ609474.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3244597 | NR_002971.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3244597 | AJ609474.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3244597 | NR_002971.1 | human_transcriptome |
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