SCARNA21
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA21 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003000.1 | 1 | 69 | 75 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream |
N(alpha)-acetyltransferase 38, NatC auxiliary subunit |
NAA38 |
LSMD1, PFAAP2 |
-20.8kb | Anti-sense | Chr. 17 - 7856685 - 7885465 on NCBI Build GRCh38 |
| Downstream | uncharacterized LOC284023 | LOC284023 | 7.1kb | Anti-sense | Chr. 17 - 7913322 - 7915947 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1700006778.hg.1This assay targets the same location as HTA transcript cluster(s) TC17000121.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4017 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4018 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215563 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766469 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215621 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766433 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766471 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215561 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215613 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215602 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215609 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215617 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215575 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215586 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766444 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215619 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766467 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215559 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215599 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215567 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766456 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215615 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215580 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766410 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215589 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215604 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215611 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766449 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766412 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215601 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766425 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215603 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215573 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766442 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215596 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766424 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215594 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766438 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215629 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215566 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215607 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215578 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766409 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215577 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215634 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766411 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215554 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215631 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215621 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215586 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215617 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215634 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215602 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766409 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766467 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215599 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215561 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215609 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215559 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215603 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215604 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766471 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766442 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766433 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766456 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215566 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766411 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766438 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766410 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766449 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215596 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215589 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215615 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215580 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215567 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766469 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215613 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215578 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215563 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766412 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215619 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215577 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215554 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766425 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215607 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215594 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215601 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215575 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766444 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215631 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30766424 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215629 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215611 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10215573 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215622 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215573 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215555 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215710 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215550 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215599 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215577 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215625 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215604 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215607 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215629 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215591 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215611 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215589 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215631 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215712 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215546 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215706 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16941106 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215702 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215594 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215711 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P16941102 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215563 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215700 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215588 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215617 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215627 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215567 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215586 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215601 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215568 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215615 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215598 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215581 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215716 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215545 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215560 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215575 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215609 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215717 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215708 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215578 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215634 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215714 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215596 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215705 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215619 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215552 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10215557 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Transcriptome Array 2.0 | PSR17001777.hg.1 | ENST00000517026.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR17001777.hg.1 | NR_003000.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR17001777.hg.1 | TC17000121.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC1700006778.hg.1 | ENST00000517026.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1700006778.hg.1 | NR_003000.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700147753.hg.1 | ENST00000517026.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1700147753.hg.1 | NR_003000.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700147753.hg.1 | ENST00000517026.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1700147753.hg.1 | NR_003000.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700147753.hg.1 | TC1700006778.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | TC1700006778.hg.1 | ENST00000517026.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1700006778.hg.1 | NR_003000.1 | Refseq |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A009087 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A009087 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3246869 | NR_003000.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3246869 | NR_003000.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3246869 | NR_003000.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3246869 | NR_003000.1 | human_transcriptome |
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