HMGB3P1
Genomic Map
Back To TopAssay Details
| Gene Symbol: HMGB3P1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_002165.1 | 1 | 52 | 94 | ||
| GenBank mRNA | BC103849.1 | - | 1 | 52 | 94 | |
| BC103850.1 | - | 1 | 52 | 94 | ||
| BC103851.1 | - | 1 | 52 | 94 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | nuclear receptor coactivator 6 | NCOA6 |
AIB3, ASC2, NRC, PRIP, RAP250, TRBP |
-7.9kb | Sense | Chr. 20 - 34714774 - 34825649 on NCBI Build GRCh38 |
| Downstream | gamma-glutamyltransferase 7 | GGT7 |
D20S101, GGT4, GGTL3, GGTL5, dJ18C9.2 |
10.3kb | Sense | Chr. 20 - 34844720 - 34872858 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC2000008945.hg.1This assay targets the same location as HTA transcript cluster(s) TC20000787.hg.1
Set Membership: |
Amplicon length between 86 and 100
3' Most
Mammalian Gene Collection
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Human Genome Microarray 4x44K v2 | A_23_P373119 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_44k_23_P373119 | - | - |
| Agilent Whole Human Genome Oligo Microarray 4x44K | 14307 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 26812 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_23_P373119 | - | - |
| SurePrint G3 Human GE Microarray G4851A | A_23_P373119 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P11142747 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P11142748 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790447 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790450 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790451 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790449 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P11142747 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790447 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790450 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P11142748 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790449 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31790451 | - | - |
| Whole Human Genome Oligo Microarray G4112A | A_23_P373119 | - | - |
| Agilent Whole Human Genome Microarray 4x44K G4112F | A_23_P373119 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P17188687 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142732 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142735 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142747 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142737 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142749 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142726 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142728 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142723 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142721 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142740 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142731 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P17188686 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142739 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142734 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P11142724 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_002165_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8065797 | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8065796 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8065795 | - | - |
| Affymetrix HT HG-U133+ PM Array Plate | 216548_PM_x_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | TC0300008879.hg.1 | ENST00000494195.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR20010500.hg.1 | TC20000787.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR20010500.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC2000008945.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC2000008945.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0900009816.hg.1 | ENST00000414981.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0500011715.hg.1 | ENST00000508037.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR2000162281.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR2000162281.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162281.hg.1 | TC2000008945.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR2000162281.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162281.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0300008879.hg.1 | ENST00000494195.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0900009816.hg.1 | ENST00000414981.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0500011715.hg.1 | ENST00000508037.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC2000008945.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC2000008945.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC2000008945.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162279.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR2000162279.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162279.hg.1 | TC2000008945.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR2000162279.hg.1 | ENST00000393368.2 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR2000162279.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162280.hg.1 | NR_002165.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR2000162280.hg.1 | TC2000008945.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR2000162280.hg.1 | NR_002165.1 | Refseq |
| Human Genome U133 Plus 2.0 Array | 216548_x_at | - | - |
| Human Genome U133 Plus 2.0 Array | 216548_PM_x_at | - | - |
| Human Genome U133A 2.0 Array | 216548_PM_x_at | - | - |
| Human Genome U133A 2.0 Array | 216548_x_at | - | - |
| AffymetrixPathwork Diagnostics Pathchip | pw539523 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at7 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at5 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at1 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at6 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at10 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at2 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at11 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at3 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at8 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at9 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 216548_x_at4 | - | - |
| Human Genome U133 Set | 216548_x_at | - | - |
| Human Genome U133 Set | 216548_PM_x_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A007097 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A007097 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanRef-8 v3.0 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanRef-8 v3.0 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanRef-8 v3.0 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanRef-8 v3.0 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanHT-12 V3.0 expression beadchip | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanHT-12 V3.0 expression beadchip | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanHT-12 V3.0 expression beadchip | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanHT-12 V3.0 expression beadchip | ILMN_2103343 | NR_002165.1 | human_transcriptome |
| Illumina HumanRef-8 WG-DASL v3.0 | ILMN_2103343 | BC103849.1 | human_transcriptome |
| Illumina HumanRef-8 WG-DASL v3.0 | ILMN_2103343 | BC103850.1 | human_transcriptome |
| Illumina HumanRef-8 WG-DASL v3.0 | ILMN_2103343 | BC103851.1 | human_transcriptome |
| Illumina HumanRef-8 WG-DASL v3.0 | ILMN_2103343 | NR_002165.1 | human_transcriptome |
Back To Top