Hs03653824_m1

• Gene Symbol: ACAA1
• Gene Name: acetyl-CoA acyltransferase 1
• Gene Aliases: ACAA, PTHIO, THIO
• Chromosome Location: Chr.3: 38122710 - 38137242 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: ACAA1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_024024.1		4 - 5	610		93
	XM_006713123.2	XP_006713186.1	4 - 5	495		93
GenBank mRNA	AF035295.1	-	4 - 5	341		93
	AK301056.1	-	4 - 5	462		93
	AK303251.1	-	5 - 6	448		93
	AK316551.1	-	4 - 5	460		93

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BM920780.1	-		429		Chr. - - [-] on Build	93
GenBankmRNA	DC407057.1	-	4 - 5	445		Chr. 3 - 38129326 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC389650.1	-	4 - 5	462		Chr. 3 - 38127829 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	CN404547.1	-	1 - 2	104		Chr. 3 - 38126431 - 38132009 [-] on Build GRCh38	93
GenBankmRNA	DC407133.1	-	5 - 6	448		Chr. 3 - 38129311 - 38137036 [-] on Build GRCh38	93
GenBankmRNA	DC392726.1	-	4 - 5	442		Chr. 3 - 38129298 - 38137074 [-] on Build GRCh38	93
GenBankmRNA	DC389402.1	-	4 - 5	457		Chr. 3 - 38127829 - 38137089 [-] on Build GRCh38	93
GenBankmRNA	DC350465.1	-	4 - 5	496		Chr. 3 - 38129314 - 38137127 [-] on Build GRCh38	93
GenBankmRNA	DC392432.1	-	4 - 5	478		Chr. 3 - 38129300 - 38137110 [-] on Build GRCh38	93
GenBankmRNA	BI828229.1	-	4 - 5	464		Chr. 3 - 38126558 - 38137090 [-] on Build GRCh38	93
GenBankmRNA	BI910767.1	-	3 - 4	388		Chr. 3 - 38127631 - 38137078 [-] on Build GRCh38	93
GenBankmRNA	CB153033.1	-	3 - 4	407		Chr. 3 - 38129320 - 38137097 [-] on Build GRCh38	93
GenBankmRNA	BI859522.1	-	4 - 5	439		Chr. 3 - 38126518 - 38137071 [-] on Build GRCh38	93
GenBankmRNA	DC300438.1	-	4 - 5	463		Chr. 3 - 38129351 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	DR759914.1	-	4 - 5	491		Chr. 3 - 38126535 - 38137123 [-] on Build GRCh38	93
GenBankmRNA	DC303904.1	-	4 - 5	445		Chr. 3 - 38127838 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC302348.1	-	4 - 5	445		Chr. 3 - 38127835 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC302655.1	-	4 - 5	445		Chr. 3 - 38129323 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC391454.1	-	4 - 5	457		Chr. 3 - 38129289 - 38137089 [-] on Build GRCh38	93
GenBankmRNA	DC421214.1	-	4 - 5	462		Chr. 3 - 38127844 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	DC392110.1	-	4 - 5	457		Chr. 3 - 38129293 - 38137089 [-] on Build GRCh38	93
GenBankmRNA	DC304390.1	-	4 - 5	457		Chr. 3 - 38129289 - 38137089 [-] on Build GRCh38	93
GenBankmRNA	BI908771.1	-	4 - 5	471		Chr. 3 - 38126625 - 38137103 [-] on Build GRCh38	93
GenBankmRNA	DC392662.1	-	4 - 5	436		Chr. 3 - 38129285 - 38137068 [-] on Build GRCh38	93
GenBankmRNA	DC421332.1	-	4 - 5	495		Chr. 3 - 38129338 - 38137127 [-] on Build GRCh38	93
GenBankmRNA	DC407206.1	-	4 - 5	488		Chr. 3 - 38129329 - 38137120 [-] on Build GRCh38	93
GenBankmRNA	DC356880.1	-	4 - 5	460		Chr. 3 - 38129353 - 38137092 [-] on Build GRCh38	93
GenBankmRNA	DC359155.1	-	4 - 5	464		Chr. 3 - 38129339 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	DC419407.1	-	4 - 5	436		Chr. 3 - 38127838 - 38137068 [-] on Build GRCh38	93
GenBankmRNA	DC388247.1	-	4 - 5	495		Chr. 3 - 38129300 - 38137127 [-] on Build GRCh38	93
GenBankmRNA	DC406353.1	-	4 - 5	495		Chr. 3 - 38129316 - 38137127 [-] on Build GRCh38	93
GenBankmRNA	DC391273.1	-	4 - 5	458		Chr. 3 - 38127848 - 38137089 [-] on Build GRCh38	93
GenBankmRNA	DC388249.1	-	4 - 5	445		Chr. 3 - 38127839 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC392494.1	-	4 - 5	445		Chr. 3 - 38129326 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC385404.1	-	4 - 5	445		Chr. 3 - 38127839 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC387530.1	-	4 - 5	445		Chr. 3 - 38127851 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	CN298780.1	-	2 - 3	595		Chr. 3 - 38129329 - 38134467 [-] on Build GRCh38	93
GenBankmRNA	BM805894.1	-		441		Chr. - - [-] on Build	93
GenBankmRNA	DC387832.1	-	4 - 5	493		Chr. 3 - 38129316 - 38137125 [-] on Build GRCh38	93
GenBankmRNA	DC381523.1	-	4 - 5	505		Chr. 3 - 38129331 - 38137137 [-] on Build GRCh38	93
GenBankmRNA	DC361972.1	-	4 - 5	445		Chr. 3 - 38127836 - 38137077 [-] on Build GRCh38	93
GenBankmRNA	DC414044.1	-	4 - 5	458		Chr. 3 - 38127845 - 38137090 [-] on Build GRCh38	93
GenBankmRNA	DA536222.1	-	3 - 4	402		Chr. 3 - 38127778 - 38137092 [-] on Build GRCh38	93
GenBankmRNA	DC389220.1	-	4 - 5	462		Chr. 3 - 38127843 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	BI820156.1	-	4 - 5	417		Chr. 3 - 38126523 - 38137049 [-] on Build GRCh38	93
GenBankmRNA	BI837892.1	-	4 - 5	454		Chr. 3 - 38126583 - 38137085 [-] on Build GRCh38	93
GenBankmRNA	DA915814.1	-	5 - 6	342		Chr. 3 - 38126553 - 38137127 [-] on Build GRCh38	93
GenBankmRNA	DB124356.1	-	3 - 4	447		Chr. 3 - 38129351 - 38137137 [-] on Build GRCh38	93
GenBankmRNA	DC411451.1	-	4 - 5	462		Chr. 3 - 38127845 - 38137094 [-] on Build GRCh38	93
GenBankmRNA	BM919197.1	-		477		Chr. - - [-] on Build	93

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	deleted in lung and esophageal cancer 1	DLEC1	CFAP81, DLC-1, DLC1, F56	-6.6kb	Anti-sense	Chr. 3 - 38038595 - 38122741 on NCBI Build GRCh38
Downstream	myeloid differentiation primary response 88	MYD88	MYD88D	6.5kb	Anti-sense	Chr. 3 - 38138478 - 38143022 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300010744.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03001293.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK303251.1,XM_006713123.2 transcripts.

• Set Membership: Amplicon length between 86 and 100, Homo sapiens, Probe spans exons

Panther Classification:

Molecular Function -

acetyltransferase

Gene Ontology Categories:

Process(es)

very long-chain fatty acid metabolic process
fatty acid beta-oxidation
bile acid metabolic process
fatty acid beta-oxidation using acyl-CoA oxidase
alpha-linolenic acid metabolic process

Function(s)

acetyl-CoA C-acyltransferase activity
protein binding
acetate CoA-transferase activity
palmitoyl-CoA oxidase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	TC03001293.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000333167.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000358122.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000444607.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000450296.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000480865.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	ENST00000544624.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	NM_001607.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03022213.hg.1	NR_024024.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000333167.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000411549.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000418880.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000423611.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000440176.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000447223.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000450296.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000452171.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000469559.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000480865.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000625927.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000627515.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	NM_001607.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	NR_024024.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000333167.12	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000411549.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000418880.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000423611.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000440176.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000447223.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000450296.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000452171.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000469559.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000480865.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000625927.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	ENST00000627515.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	NM_001607.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	NR_024024.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300178232.hg.1	TC0300010744.hg.1	Clariom D TC