Hs03653952_m1

• Gene Symbol: LINC01548
• Gene Name: long intergenic non-protein coding RNA 1548
• Gene Aliases: C21orf54
• Chromosome Location: Chr.21: 33165470 - 33170236 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LINC01548
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_024102.1		2 - 3	234		84
GenBank mRNA	BC105115.1	-	2 - 3	234		84
	BC105117.1	-	2 - 3	234		84
	BX116511.1	-	2 - 3	187		84

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AA400173.1	-	2 - 3	187		Chr. 21 - 33165535 - 33170189 [-] on Build GRCh38	84
GenBankmRNA	AA934973.1	-	2 - 3			Chr. 21 - 33165528 - 33169823 [+] on Build GRCh38	84
GenBankmRNA	AA400147.1	-	2 - 3			Chr. 21 - 33165470 - 33169802 [+] on Build GRCh38	84

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC101928107	LOC101928107		-44.7kb	Sense	Chr. 21 - 33111704 - 33123700 on NCBI Build GRCh38
Downstream	interferon alpha and beta receptor subunit 2	IFNAR2	IFN-R, IFN-alpha-REC, IFNABR, IFNARB, IMD45	60.1kb	Anti-sense	Chr. 21 - 33229895 - 33264513 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2100007981.hg.1
This assay targets the same location as HTA transcript cluster(s) TC21000407.hg.1

• Set Membership: Amplicon length between 71 and 85, Mammalian Gene Collection, Homo sapiens, Probe spans exons

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR21004598.hg.1	ENST00000440586.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21004598.hg.1	ENST00000451980.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21004598.hg.1	NR_024102.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21004598.hg.1	TC21000407.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	TC2100007981.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100153796.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	PSR2100153796.hg.1	NR_024102.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100153796.hg.1	TC2100007981.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100153796.hg.1	ENST00000451980.2	Ensembl
Affymetrix Human Clariom D Assay	PSR2100153796.hg.1	NR_024102.1	Refseq