Name: [Hs03657868_m1] [LINC01249]
Creator: Thermo Fisher Scientific
Keywords: [LINC01249] Assay, [long intergenic non-protein coding RNA 1249] Assay

Assay Details

Gene Symbol: LINC01249
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_034134.1		1 - 2	61		80
GenBank mRNA	AK307324.1	-	1 - 2	61		80
GenBank mRNA	BC047589.1	-	1 - 2	55		80

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BX116583.1	-	1 - 2	42	Chr. 2 - 4630200 - 4656203 [-] on Build GRCh38	80
GenBankmRNA	DB443818.1	-	1 - 2	55	Chr. 2 - 4634947 - 4656215 [-] on Build GRCh38	80
GenBankmRNA	HY052246.1	-	1 - 2	87	Chr. 2 - 4634982 - 4656247 [-] on Build GRCh38	80
GenBankmRNA	BI460630.1	-	1 - 2	60	Chr. 2 - 4630285 - 4656215 [-] on Build GRCh38	80
GenBankmRNA	HY034903.1	-	1 - 2	71	Chr. 2 - 4634893 - 4656232 [-] on Build GRCh38	80
GenBankmRNA	DC401329.1	-	1 - 2	61	Chr. 2 - 4630362 - 4656222 [-] on Build GRCh38	80
GenBankmRNA	HY045405.1	-	1 - 2	87	Chr. 2 - 4634938 - 4656247 [-] on Build GRCh38	80
GenBankmRNA	DB454366.1	-	1 - 2	54	Chr. 2 - 4642943 - 4656215 [-] on Build GRCh38	80
GenBankmRNA	BG718846.1	-	1 - 2	47	Chr. 2 - 4630207 - 4656207 [-] on Build GRCh38	80

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC105373395	LOC105373395		-627.2kb	Anti-sense	Chr. 2 - 4020896 - 4025307 on NCBI Build GRCh38
Downstream	long intergenic non-protein coding RNA 1248	LINC01248		977.9kb	Sense	Chr. 2 - 5634141 - 5691118 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200011575.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02001532.hg.1

Set Membership:

Amplicon length between 71 and 85

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR02024891.hg.1	TC02001532.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02024891.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02024891.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02024891.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02024890.hg.1	TC02001532.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR02024890.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02024890.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02024890.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200184050.hg.1	TC0200011575.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200184052.hg.1	TC0200011575.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000412134.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000421212.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	ENST00000432314.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq
Affymetrix Human Clariom D Assay	TC0200011575.hg.1	NR_034134.1	Refseq

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Genomic Map