Hs03659597_m1

• Gene Symbol: LOC400558
• Gene Name: uncharacterized LOC400558
• Gene Aliases: -
• Chromosome Location: Chr.16: 89166383 - 89169147 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LOC400558
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_046200.1		2 - 3	283		99
GenBank mRNA	AK130578.1	-	2 - 3	283		99

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	long intergenic non-protein coding RNA 304	LINC00304	C16orf81, NCRNA00304	-3.5kb	Sense	Chr. 16 - 89159220 - 89163675 on NCBI Build GRCh38
Downstream	cadherin 15	CDH15	CDH14, CDH3, CDHM, MCAD, MRD3	2.6kb	Sense	Chr. 16 - 89171755 - 89195492 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600008867.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK130578.1 transcripts.

• Set Membership: Amplicon length between 86 and 100, 3' Most, Homo sapiens, Probe spans exons

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3388588	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	48877	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_16_P03198480	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P03198480	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	NR_046200.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	NR_046200.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008867.hg.1	NR_046200.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166147.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166147.hg.1	NR_046200.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166147.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166147.hg.1	NR_046200.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166147.hg.1	TC1600008867.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	ENST00000378340.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	NR_046200.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	NR_046200.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008867.hg.1	NR_046200.1	Refseq

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3281877	AK130578.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3209750	AK130578.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3209750	AK130578.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3281877	AK130578.1	human_transcriptome