Name: [Hs03671063_s1] [CBX3P2]
Creator: Thermo Fisher Scientific
Keywords: [CBX3P2] Assay, [chromobox 3 pseudogene 2] Assay

Assay Details

Gene Symbol: CBX3P2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_033754.2		2	1163		84
GenBank mRNA	BC018088.1	-	1	751		84

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DB566734.1	-	1	209	Chr. 18 - 2652170 - 2652644 [-] on Build GRCh38	84
GenBankmRNA	BX329736.2	-	1		Chr. 18 - 2652175 - 2653070 [+] on Build GRCh38	84
GenBankmRNA	DB340383.1	-	1		Chr. 18 - 2652171 - 2652707 [+] on Build GRCh38	84
GenBankmRNA	DB565545.1	-	1	192	Chr. 18 - 2652170 - 2652627 [-] on Build GRCh38	84
GenBankmRNA	AA348737.1	-	1	117	Chr. 18 - 2652249 - 2652552 [-] on Build GRCh38	84

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	NDC80, kinetochore complex component	NDC80	HEC, HEC1, HsHec1, KNTC2, TID3, hsNDC80	-35.5kb	Anti-sense	Chr. 18 - 2571511 - 2616635 on NCBI Build GRCh38
Downstream	structural maintenance of chromosomes flexible hinge domain containing 1	SMCHD1		2.7kb	Anti-sense	Chr. 18 - 2655887 - 2805017 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1800007899.hg.1
This assay targets the same location as HTA transcript cluster(s) TC18000284.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P10509362	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P17032369	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P31099841	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P31099854	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P31099852	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P31099847	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P10509363	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P10509365	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P17032367	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	586192	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_32_P94221	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	31412	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	10257	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3606465	-	-
Whole Human Genome Oligo Microarray G4112A	A_32_P94221	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_32_P94221	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P40931692	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT HG-U133+ PM Array Plate	1557488_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	PSR18003336.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR18003336.hg.1	TC18000284.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR18003337.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR18003337.hg.1	TC18000284.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154037.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154040.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154040.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154040.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154040.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154040.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154038.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	TC1800007899.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154035.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154035.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154035.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154035.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154035.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	ENST00000583365.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154036.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154039.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154039.hg.1	NR_033754.2	Refseq
Affymetrix Human Clariom D Assay	PSR1800154039.hg.1	TC1800007899.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800154039.hg.1	ENST00000579647.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800154039.hg.1	NR_033754.2	Refseq
Human Genome U133 Plus 2.0 Array	1557488_PM_at	-	-
Human Genome U133 Plus 2.0 Array	1557488_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1557488_at11	-	-

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Catalog #	4426961
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Genomic Map