Name: [Hs03671138_s1] [LINC01560]
Creator: Thermo Fisher Scientific
Keywords: [LINC01560] Assay, [long intergenic non-protein coding RNA 1560] Assay

Assay Details

Gene Symbol: LINC01560
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_126059.1		1	1404		63
GenBank mRNA	BC025179.1	-	1	549		63

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AA278227.1	-	1	264	Chr. X - 47483855 - 47484331 [+] on Build GRCh38	63
GenBankmRNA	BI260296.1	-	1	547	Chr. X - 47483571 - 47484361 [+] on Build GRCh38	63
GenBankmRNA	HY264955.1	-	1		Chr. X - 47483870 - 47484325 [-] on Build GRCh38	63

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	zinc finger protein 41	ZNF41	MRX89	-337.0	Anti-sense	Chr. X - 47444691 - 47483671 on NCBI Build GRCh38
Downstream	A-Raf proto-oncogene, serine/threonine kinase	ARAF	A-RAF, ARAF1, PKS2, RAFA1	76.3kb	Sense	Chr. X - 47561100 - 47571921 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00007144.hg.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_23_P330836	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	29254	-	-
Agilent Human Genome CGH Microarray 44B	A_14_P134670	-	-
Agilent Human Genome CGH Microarray 44A	A_14_P134670	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	23580	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_23_P330836	-	-
Agilent Human Genome CGH Microarray 105A (G4412A)	A_14_P134670	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_14_P134670	-	-
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	AK311809.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC007283.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC007603.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC007945.2	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC010028.2	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC010187.2	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC016378.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC018829.2	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC024649.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC070224.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	BC100025.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR591220.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR598342.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR603659.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR616168.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR619273.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	CR622474.1	genbank_mrna_human
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	NM_001015.3	refseq_mrna_human_NM
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	111149	X06617.1	genbank_mrna_human
Agilent HD CGH Microarray (2X105K) Oxford design AMADID#019015	70040	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_14_P134670	-	-
Agilent Human 1B Microarray G4111A	A_32_P11016	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	8167164	-	-
Affymetrix Human Gene 1.1 ST Array	8167163	-	-
Affymetrix HT HG-U133+ PM Array Plate	239034_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	TC0X00007144.hg.1	ENST00000357412.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00007144.hg.1	ENST00000624822.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148699.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148699.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148699.hg.1	TC0X00007144.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0X00007144.hg.1	ENST00000357412.2	Ensembl
Affymetrix Human Clariom D Assay	TC0X00007144.hg.1	ENST00000624822.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00007144.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	ENST00000357412.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	ENST00000624822.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	ENST00000357412.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	ENST00000624822.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	NR_126059.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00148697.hg.1	TC0X00007144.hg.1	Clariom D TC
Human Genome U133 Plus 2.0 Array	239034_PM_at	-	-
Human Genome U133 Plus 2.0 Array	239034_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	239034_at9	-	-
Human Genome U95 Set	64969_PM_r_at	-	-
Human Genome U95 Set	64969_r_at	-	-
Human Genome U133 Set	239034_PM_at	-	-
Human Genome U133 Set	239034_at	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_1678179	-	-
HumanHT-12 v4 Expression BeadChip	ILMN_1671416	BC025179.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1671416	BC025179.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1678179	-	-
Illumina human-6 v2.0 expression beadchip	ILMN_1678179	-	-
Illumina human-6 v2.0 expression beadchip	ILMN_1671416	BC025179.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1671416	BC025179.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1678179	-	-
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1671416	BC025179.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1678179	-	-

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System Message

Genomic Map