Hs03681477_m1

• Gene Symbol: CALCOCO1
• Gene Name: calcium binding and coiled-coil domain 1
• Gene Aliases: Cocoa, PP13275, calphoglin
• Chromosome Location: Chr.12: 53711118 - 53727523 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CALCOCO1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_026554.1		2 - 3	300		95
GenBank mRNA	AK296497.1	-	2 - 3	229		95

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DC390027.1	-	2 - 3	229		Chr. 12 - 53722022 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	DC407608.1	-	2 - 3	229		Chr. 12 - 53722061 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	DC308821.1	-	2 - 3	221		Chr. 12 - 53722046 - 53727443 [-] on Build GRCh38	95
GenBankmRNA	DC306790.1	-	2 - 3	229		Chr. 12 - 53722049 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	BP328880.1	-	2 - 3	234		Chr. 12 - 53722027 - 53727457 [-] on Build GRCh38	95
GenBankmRNA	DC344416.1	-	2 - 3	234		Chr. 12 - 53722055 - 53727457 [-] on Build GRCh38	95
GenBankmRNA	DC352601.1	-	2 - 3	229		Chr. 12 - 53722060 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	BP311774.1	-	2 - 3	228		Chr. 12 - 53722022 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	DC407630.1	-	2 - 3	229		Chr. 12 - 53722055 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	DC408691.1	-	2 - 3	231		Chr. 12 - 53722060 - 53727453 [-] on Build GRCh38	95
GenBankmRNA	DC343823.1	-	2 - 3	229		Chr. 12 - 53722055 - 53727452 [-] on Build GRCh38	95
GenBankmRNA	EL594823.1	-	3 - 4			Chr. 12 - 53721543 - 53725182 [+] on Build GRCh38	95
GenBankmRNA	BP328837.1	-	2 - 3	234		Chr. 12 - 53722031 - 53727457 [-] on Build GRCh38	95
GenBankmRNA	DC339879.1	-	2 - 3	223		Chr. 12 - 53722041 - 53727446 [-] on Build GRCh38	95
GenBankmRNA	DC422955.1	-	2 - 3	223		Chr. 12 - 53722054 - 53727446 [-] on Build GRCh38	95
GenBankmRNA	DC423207.1	-	2 - 3	229		Chr. 12 - 53722058 - 53727452 [-] on Build GRCh38	95

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9)	ATP5G2	ATP5A	-46.9kb	Sense	Chr. 12 - 53665160 - 53677546 on NCBI Build GRCh38
Downstream	chondrogenesis-associated transcript	CISTR	CISTR-ACT, CISTRACT, re52431	25.2kb	Sense	Chr. 12 - 53750447 - 53757034 on NCBI Build GRCh38

More Information

Additional Information:

This assay is in the 5'UTR region of the AK296497.1 transcripts.

• Set Membership: Amplicon length between 86 and 100, Homo sapiens, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
signal transduction
positive regulation of gene expression
Wnt signaling pathway
intracellular steroid hormone receptor signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

core promoter binding
chromatin binding
transcription cofactor activity
transcription coactivator activity
protein binding
beta-catenin binding
protein C-terminus binding
ligand-dependent nuclear receptor transcription coactivator activity
sequence-specific DNA binding
transcription regulatory region DNA binding
armadillo repeat domain binding