Hs03805856_g1

• Gene Symbol: BDNF
• Gene Name: brain derived neurotrophic factor
• Gene Aliases: ANON2, BULN2
• Chromosome Location: Chr.11: 27654893 - 27722058 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: BDNF
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001143814.1	NP_001137286.1	2 - 3	432		117
	NM_001143816.1	NP_001137288.1	1 - 2	830		117
GenBank mRNA	AY054406.3	-	1 - 2	120		117
	EF689010.1	-	1 - 2	844		117
	EF689016.1	-	2 - 3	432		117

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1100010410.hg.1
This assay targets the same location as HTA transcript cluster(s) TC11001513.hg.1

Additional Information:

This assay is in the 5'UTR region of the AY054406.3,EF689010.1,EF689016.1,NM_001143814.1,NM_001143816.1 transcripts.

• Set Membership: Amplicon length greater than or equal to 101, Apoptosis, Detect Genomic DNA, Homo sapiens, Probe spans exons

Panther Classification:

Molecular Function -

neurotrophic factor

Gene Ontology Categories:

Process(es)

cell-cell signaling
nervous system development
axon guidance
synapse assembly
brain-derived neurotrophic factor receptor signaling pathway
positive regulation of brain-derived neurotrophic factor receptor signaling pathway
negative regulation of neuron apoptotic process
collateral sprouting
positive regulation of collateral sprouting
positive regulation of synapse assembly

Function(s)

neurotrophin TRKB receptor binding
growth factor activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR11018946.hg.1	ENST00000439476.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11018946.hg.1	ENST00000525528.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11018946.hg.1	NM_001143816.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR11018946.hg.1	NM_170735.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR11018946.hg.1	TC11001513.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	ENST00000439476.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	ENST00000525528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	NM_001143816.1	Refseq
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	NM_170735.5	Refseq
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	ENST00000439476.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	ENST00000525528.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	NM_001143816.1	Refseq
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	NM_170735.5	Refseq
Affymetrix Human Clariom D Assay	PSR1100178908.hg.1	TC1100010410.hg.1	Clariom D TC