Name: [Hs03848412_s1] [LINC00641]
Creator: Thermo Fisher Scientific
Keywords: [LINC00641] Assay, [long intergenic non-protein coding RNA 641] Assay

Assay Details

Gene Symbol: LINC00641
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038970.1		1	1047		101
GenBank mRNA	BC035145.1	-	1	1050		101

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BF962167.1	-	1	324	Chr. 14 - 21204402 - 21204774 [-] on Build GRCh38	101
GenBankmRNA	DA319543.1	-	1	117	Chr. 14 - 21204047 - 21204573 [-] on Build GRCh38	101
GenBankmRNA	DB279453.1	-	1	64	Chr. 14 - 21203973 - 21204520 [-] on Build GRCh38	101
GenBankmRNA	CV393152.1	-	1		Chr. 14 - 21204402 - 21204771 [+] on Build GRCh38	101

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	olfactory receptor family 5 subfamily AU member 1	OR5AU1	OR14-38	-44.1kb	Sense	Chr. 14 - 21154937 - 21156025 on NCBI Build GRCh38
Downstream	heterogeneous nuclear ribonucleoprotein C (C1/C2)	HNRNPC	C1, C2, HNRNP, HNRPC, SNRPC	3.6kb	Sense	Chr. 14 - 21209136 - 21269479 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1400008624.hg.1
This assay targets the same location as HTA transcript cluster(s) TC14000914.hg.1

Set Membership:

Amplicon length greater than or equal to 101

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Human CGH Microarray 4x180K	165041	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	388641	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	326471	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	165020	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3543133	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_24_P931030	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	29365	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	48883	-	-
Agilent Human Genome CGH + SNP Microarray	A_16_P02872029	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3543133	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3543133	-	-
Whole Human Genome Oligo Microarray G4112A	A_24_P931030	-	-
Agilent Human Genome CGH Microarray 105A (G4412A)	A_16_P02872029	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_16_P02872029	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_24_P931030	-	-
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	14837	-	-
Agilent HD CGH Microarray (2X105K) Oxford design AMADID#019015	13883	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P02872029	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P19973854	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P02872020	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P02872023	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P19973845	-	-
Agilent Human 1B Microarray G4111A	A_32_P761678	-	-
Agilent Human 1B Microarray G4111A	A_32_P346729	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_16_P19973845	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_16_P02872029	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT HG-U133+ PM Array Plate	240902_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14009891.hg.1	NR_038970.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR14009891.hg.1	TC14000914.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1400162185.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400162185.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400162185.hg.1	TC1400008624.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1400162185.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400162185.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400162186.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400162186.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	PSR1400162186.hg.1	TC1400008624.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1400162186.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1400162186.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555379.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	ENST00000555688.1	Ensembl
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038970.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Affymetrix Human Clariom D Assay	TC1400008624.hg.1	NR_038971.1	Refseq
Human Genome U133 Plus 2.0 Array	240902_at	-	-
Human Genome U133 Plus 2.0 Array	240902_PM_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	240902_at8	-	-
Human Genome U95 Set	62134_PM_at	-	-
Human Genome U95 Set	62134_at	-	-
Human Genome U95 Set	88306_PM_at	-	-
Human Genome U95 Set	91262_PM_at	-	-
Human Genome U95 Set	91262_at	-	-
Human Genome U95 Set	74355_at	-	-
Human Genome U95 Set	74355_PM_at	-	-
Human Genome U95 Set	88306_at	-	-
Human Genome U133 Set	240902_at	-	-
Human Genome U133 Set	240902_PM_at	-	-

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Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A050569	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A050568	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A050569	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A050568	-	-

System Message

Genomic Map