Hs03854580_s1

• Gene Symbol: NUDT16
• Gene Name: nudix hydrolase 16
• Gene Aliases: -
• Chromosome Location: Chr.3: 131381671 - 131388830 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: NUDT16
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001171905.1	NP_001165376.1	4	3860		100
	NM_152395.2	NP_689608.2	3	4034		100
	NR_033268.1		2	4121		100
GenBank mRNA	AK091353.1	-	1	450		100

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DA486949.1	-	1	450		Chr. 3 - 131386298 - 131386853 [+] on Build GRCh38	100
GenBankmRNA	AA774801.1	-	1	179		Chr. 3 - 131386570 - 131387053 [+] on Build GRCh38	100
GenBankmRNA	BF114837.1	-	1	135		Chr. 3 - 131386613 - 131387100 [+] on Build GRCh38	100
GenBankmRNA	BQ706802.1	-	1	536		Chr. 3 - 131386212 - 131387066 [+] on Build GRCh38	100
GenBankmRNA	BQ934230.1	-	1	494		Chr. 3 - 131386264 - 131387150 [+] on Build GRCh38	100

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC339874	LOC339874		-4.8kb	Anti-sense	Chr. 3 - 131325092 - 131381475 on NCBI Build GRCh38
Downstream	mitochondrial ribosomal protein L3	MRPL3	COXPD9, MRL3, RPML3	73.8kb	Anti-sense	Chr. 3 - 131462201 - 131503016 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300008830.hg.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene NUDT16

Gene Ontology Categories:

Process(es)

adenosine to inosine editing
mRNA catabolic process
proteolysis
positive regulation of cell proliferation
snoRNA catabolic process
dephosphorylation
nucleobase-containing small molecule catabolic process
dITP catabolic process
IDP catabolic process
positive regulation of cell cycle process
XDP catabolic process
negative regulation of rRNA processing
positive regulation of double-strand break repair

Function(s)

magnesium ion binding
mRNA binding
GTP binding
metalloexopeptidase activity
manganese ion binding
snoRNA binding
dITP diphosphatase activity
identical protein binding
protein homodimerization activity
m7G(5')pppN diphosphatase activity
cobalt ion binding
inosine-diphosphatase activity
dIDP diphosphatase activity
nucleotide phosphatase activity, acting on free nucleotides
XTP binding
ITP binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163013.hg.1	TC0300008830.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000502852.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000521288.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	ENST00000537561.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171905.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_001171906.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NM_152395.2	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008830.hg.1	NR_033268.1	Refseq