Hs03868029_s1

• Gene Symbol: TFDP2
• Gene Name: transcription factor Dp-2
• Gene Aliases: DP2
• Chromosome Location: Chr.3: 141944428 - 142149544 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: TFDP2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001178138.1	NP_001171609.1	14	7204		102
	NM_001178139.1	NP_001171610.1	13	7166		102
	NM_001178140.1	NP_001171611.1	10	6662		102
	NM_001178141.1	NP_001171612.1	10	6595		102
	NM_001178142.1	NP_001171613.1	8	6443		102
	NM_006286.4	NP_006277.1	11	6720		102
	XM_005247731.2	XP_005247788.1	13	7169		102
	XM_011513101.2	XP_011511403.1	14	7265		102
	XM_011513102.2	XP_011511404.1	12	6838		102
	XM_011513106.2	XP_011511408.1	14	7262		102
	XM_011513108.2	XP_011511410.1	11	6992		102
	XM_011513109.2	XP_011511411.1	9	6564		102
	XM_011513111.2	XP_011511413.1	9	6561		102
	XM_017007091.1	XP_016862580.1	13	7177		102
	XM_017007092.1	XP_016862581.1	16	7423		102
	XM_017007093.1	XP_016862582.1	16	7612		102
	XM_017007094.1	XP_016862583.1	13	7198		102
	XM_017007095.1	XP_016862584.1	15	7388		102
	XM_017007096.1	XP_016862585.1	12	7095		102
	XM_017007097.1	XP_016862586.1	14	7194		102
	XM_017007098.1	XP_016862587.1	14	7342		102
	XM_017007099.1	XP_016862588.1	15	7317		102
	XM_017007101.1	XP_016862590.1	13	7150		102
	XM_017007102.1	XP_016862591.1	11	6945		102
GenBank mRNA	AK096450.1	-	1	250		102

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BF797567.1	-	1	211		Chr. 3 - 141944719 - 141947352 [-] on Build GRCh38	102
GenBankmRNA	BM464287.1	-		502		Chr. - - [-] on Build	102
GenBankmRNA	AW612322.1	-	1			Chr. 3 - 141946988 - 141947408 [+] on Build GRCh38	102
GenBankmRNA	BU596890.1	-	1	194		Chr. 3 - 141946601 - 141947333 [-] on Build GRCh38	102
GenBankmRNA	DA766812.1	-	1	250		Chr. 3 - 141946820 - 141947391 [-] on Build GRCh38	102
GenBankmRNA	AI784151.1	-	1			Chr. 3 - 141947015 - 141947248 [+] on Build GRCh38	102
GenBankmRNA	HY114495.1	-	1	249		Chr. 3 - 141946999 - 141947390 [-] on Build GRCh38	102
GenBankmRNA	DA233188.1	-	2	503		Chr. 3 - 141947046 - 141948656 [-] on Build GRCh38	102
GenBankmRNA	DB135683.1	-	1	286		Chr. 3 - 141946975 - 141947426 [-] on Build GRCh38	102
GenBankmRNA	AW044420.1	-	1			Chr. 3 - 141947023 - 141947448 [+] on Build GRCh38	102
GenBankmRNA	HY104526.1	-	1	374		Chr. 3 - 141947053 - 141947515 [-] on Build GRCh38	102
GenBankmRNA	BE644915.1	-	1			Chr. 3 - 141947015 - 141947446 [+] on Build GRCh38	102
GenBankmRNA	DB155360.1	-	1			Chr. 3 - 141946937 - 141947506 [-] on Build GRCh38	102

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ATPase Na+/K+ transporting subunit beta 3	ATP1B3	ATPB-3, CD298	-18.6kb	Anti-sense	Chr. 3 - 141876628 - 141926540 on NCBI Build GRCh38
Downstream	glycerol kinase 5 (putative)	GK5		210.1kb	Sense	Chr. 3 - 142157527 - 142225607 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300012654.hg.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Apoptosis, 3' Most, Detect Genomic DNA, Homo sapiens, 1700, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene TFDP2

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II transcription factor activity, sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription cofactor activity
protein binding
transcription factor binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000489671.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000499676.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000602556.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178138.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178139.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178140.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178141.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178142.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_006286.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000489671.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000499676.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	ENST00000602556.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178138.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178139.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178140.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178141.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_001178142.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	NM_006286.4	Refseq
Affymetrix Human Clariom D Assay	PSR0300194458.hg.1	TC0300012654.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	162141	-	-
ABI Human Genome Survey Microarray Version 2.0	210503	-	-