Hs03922344_s1

• Gene Symbol: CDX2
• Gene Name: caudal type homeobox 2
• Gene Aliases: CDX-3, CDX2/AS, CDX3
• Chromosome Location: Chr.13: 27960918 - 27969368 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: CDX2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011534875.2	XP_011533177.1	3	3166		98
	XM_011534878.2	XP_011533180.1	3	3328		98
	XM_011534879.2	XP_011533181.1	3	3293		98
GenBank mRNA	AK000205.1	-	1	451		98

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AI345995.1	-	2			Chr. 13 - 27960920 - 27961560 [+] on Build GRCh38	98
GenBankmRNA	AI340343.1	-	2			Chr. 13 - 27960920 - 27961547 [+] on Build GRCh38	98
GenBankmRNA	AI733838.1	-	2			Chr. 13 - 27960920 - 27961537 [+] on Build GRCh38	98
GenBankmRNA	AI346700.1	-	2			Chr. 13 - 27960920 - 27961512 [+] on Build GRCh38	98
GenBankmRNA	AI276788.1	-	2			Chr. 13 - 27960920 - 27961520 [+] on Build GRCh38	98
GenBankmRNA	AI309932.1	-	2			Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38	98
GenBankmRNA	AI340336.1	-	2			Chr. 13 - 27960920 - 27961509 [+] on Build GRCh38	98
GenBankmRNA	AI285323.1	-	2			Chr. 13 - 27960920 - 27961452 [+] on Build GRCh38	98
GenBankmRNA	AI261232.1	-	2			Chr. 13 - 27960920 - 27961508 [+] on Build GRCh38	98
GenBankmRNA	AI304835.1	-	2			Chr. 13 - 27960920 - 27961492 [+] on Build GRCh38	98
GenBankmRNA	AI346553.1	-	2			Chr. 13 - 27960920 - 27961499 [+] on Build GRCh38	98
GenBankmRNA	AI367898.1	-	2			Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38	98
GenBankmRNA	AI733228.1	-	2			Chr. 13 - 27960923 - 27961526 [+] on Build GRCh38	98

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2	ATP5EP2		-15.3kb	Anti-sense	Chr. 13 - 27945206 - 27945573 on NCBI Build GRCh38
Downstream	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	URAD	PRHOXNB	16.4kb	Sense	Chr. 13 - 27978106 - 27988637 on NCBI Build GRCh38

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length between 86 and 100, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
blood vessel development
trophectodermal cell differentiation
transcription from RNA polymerase II promoter
positive regulation of cell proliferation
endosome to lysosome transport
organ morphogenesis
anterior/posterior axis specification
regulation of somitogenesis
cell differentiation
somatic stem cell population maintenance
establishment or maintenance of epithelial cell apical/basal polarity
positive regulation of cell differentiation
positive regulation of transcription, DNA-templated
intestinal epithelial cell differentiation
labyrinthine layer development

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity