RNF5
Genomic Map
Back To TopAssay Details
| Gene Symbol: RNF5 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_006913.3 | NP_008844.1 | 1 | 49 | 66 | |
| GenBank mRNA | AL555609.3 | - | 1 | 77 | 66 | |
| BC111392.1 | - | 1 | 43 | 6458319 | 66 | |
| BM712189.1 | - | 1 | 370 | 66 | ||
| BU599297.1 | - | 1 | 42 | 66 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0600007636.hg.1This assay targets the same location as HTA transcript cluster(s) TC06000395.hg.1, TC6_apd_hap1000044.hg.1, TC6_cox_hap2000087.hg.1, TC6_mann_hap4000071.hg.1, TC6_mcf_hap5000073.hg.1, TC6_qbl_hap6000078.hg.1, TC6_ssto_hap7000073.hg.1
Additional Information:
This assay is in the 5'UTR region of the BC111392.1,NM_006913.3 transcripts.
Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Mammalian Gene Collection
Detect Genomic DNA
Homo sapiens
1700
Inventoried
Both primers and probe map within a single exon
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
response to bacterium
negative regulation of autophagy
protein destabilization
ERAD pathway
cellular protein catabolic process
protein K63-linked ubiquitination
protein K48-linked ubiquitination
ER-associated misfolded protein catabolic process
regulation of autophagosome assembly
ubiquitin-protein transferase activity
protein binding
zinc ion binding
ligase activity
ubiquitin protein ligase activity involved in ERAD pathway
response to bacterium
negative regulation of autophagy
protein destabilization
ERAD pathway
cellular protein catabolic process
protein K63-linked ubiquitination
protein K48-linked ubiquitination
ER-associated misfolded protein catabolic process
regulation of autophagosome assembly
ubiquitin-protein transferase activity
protein binding
zinc ion binding
ligase activity
ubiquitin protein ligase activity involved in ERAD pathway
MicroArray Probes:
Affymetrix
ABI
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001704.hg.1 | TC6_cox_hap2000087.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001704.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001481.hg.1 | TC6_mcf_hap5000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001481.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001481.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001296.hg.1 | TC6_mann_hap4000071.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001296.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001478.hg.1 | TC6_mcf_hap5000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001478.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001478.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001665.hg.1 | TC6_qbl_hap6000078.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001665.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001529.hg.1 | TC6_ssto_hap7000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001529.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004599.hg.1 | TC06000395.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004599.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004599.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004599.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004599.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001667.hg.1 | TC6_qbl_hap6000078.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001667.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001667.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001709.hg.1 | TC6_cox_hap2000087.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001709.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001709.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001476.hg.1 | TC6_mcf_hap5000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mcf_hap5001476.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001531.hg.1 | TC6_ssto_hap7000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001531.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001531.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004597.hg.1 | TC06000395.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004597.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004597.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000623.hg.1 | TC6_apd_hap1000044.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000623.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000625.hg.1 | TC6_apd_hap1000044.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000625.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000625.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001298.hg.1 | TC6_mann_hap4000071.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001298.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001298.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800010174.hg.1 | ENST00000524091.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000628.hg.1 | TC6_apd_hap1000044.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000628.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_apd_hap1000628.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001706.hg.1 | TC6_cox_hap2000087.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001706.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_cox_hap2001706.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001670.hg.1 | TC6_qbl_hap6000078.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001670.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_qbl_hap6001670.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001301.hg.1 | TC6_mann_hap4000071.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001301.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_mann_hap4001301.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001534.hg.1 | TC6_ssto_hap7000073.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001534.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR6_ssto_hap7001534.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | TC06000395.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | ENST00000427134.2 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR06004603.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800010174.hg.1 | ENST00000524091.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0800010174.hg.1 | NR_003129.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152781.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152781.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152781.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152781.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152781.hg.1 | TC0600007636.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152786.hg.1 | TC0600007636.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0600152782.hg.1 | TC0600007636.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000375094.3 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | ENST00000487940.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Affymetrix Human Clariom D Assay | TC0600007636.hg.1 | NM_006913.3 | Refseq |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Human Genome Survey Microarray Version 2.0 | 687235 | - | - |
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