Hs04231807_s1

Gene Symbol:

MIR3164 TPCN2

Gene Name:

microRNA 3164

two pore segment channel 2

Gene Aliases:

-

SHEP10, TPC2

Chromosome Location:

Chr.11: 69083176 - 69083258 on Build GRCh38

Chromosome Location:

Chr.11: 69048876 - 69090604 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: MIR3164
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_036122.1		1	42		72

Gene Symbol: TPCN2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011544805.1	XP_011543107.1	18	2425		72
	XM_011544806.1	XP_011543108.1	19	2475		72

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	MRGPRF antisense RNA 1	MRGPRF-AS1		-64.7kb	Sense	Chr. 11 - 69012354 - 69018447 on NCBI Build GRCh38
Downstream	uncharacterized LOC338694	LOC338694		64.0kb	Anti-sense	Chr. 11 - 69147228 - 69171562 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay is designed to target a precursor miRNA (pre-miRNA) target. It may not discriminate between the primary transcript (pri-miRNA) and the pre-miRNA for this miRNA. If you are looking for an assay to detect the mature miRNA, please search the MicroRNA collection of assays.
This assay targets the same location as Clariom D transcript cluster(s) TC1100008219.hg.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

ion channel, transporter

Gene Ontology Categories:

Process(es)

cellular calcium ion homeostasis
smooth muscle contraction
lysosome organization
regulation of autophagy
calcium-mediated signaling
response to vitamin D
ion transmembrane transport
regulation of ion transmembrane transport
release of sequestered calcium ion into cytosol
membrane depolarization during action potential

Function(s)

voltage-gated calcium channel activity
protein binding
protein kinase binding
identical protein binding
NAADP-sensitive calcium-release channel activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1100008219.hg.1	ENST00000581178.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1100008219.hg.1	NR_036122.1	Refseq
Affymetrix Human Clariom D Assay	PSR1100160682.hg.1	ENST00000581178.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1100160682.hg.1	NR_036122.1	Refseq
Affymetrix Human Clariom D Assay	PSR1100160682.hg.1	ENST00000581178.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1100160682.hg.1	NR_036122.1	Refseq
Affymetrix Human Clariom D Assay	PSR1100160682.hg.1	TC1100008219.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1100008219.hg.1	ENST00000581178.1	Ensembl
Affymetrix Human Clariom D Assay	TC1100008219.hg.1	NR_036122.1	Refseq