SCARNA18
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA18 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003139.1 | 1 | 73 | 78 | ||
| GenBank mRNA | AM055742.1 | - | 1 | 73 | 78 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | long intergenic non-protein coding RNA 1338 | LINC01338 | -204.4kb | Sense | Chr. 5 - 82850864 - 82859836 on NCBI Build GRCh38 | |
| Downstream | X-ray repair cross complementing 4 | XRCC4 | SSMED | 13.1kb | Anti-sense | Chr. 5 - 83077409 - 83370333 on NCBI Build GRCh38 |
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Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0500011335.hg.1This assay targets the same location as HTA transcript cluster(s) TC05001554.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4108 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4109 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238201 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238217 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238194 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238236 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238200 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238230 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238221 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238239 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238245 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057758 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238225 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238187 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238218 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238244 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238214 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057710 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057720 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057745 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238233 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238210 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057718 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057753 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057709 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238190 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057750 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238228 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057764 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238242 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238192 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238203 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238243 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238196 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238208 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057722 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238205 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238241 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057725 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057719 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238240 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238237 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057735 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238201 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238221 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057722 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238242 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238200 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238190 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238236 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238210 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238205 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057710 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057745 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238217 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057764 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057719 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238218 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057753 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238196 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238243 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238194 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057750 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057709 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238208 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238192 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238228 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238214 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238225 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057758 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238187 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238245 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238203 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238239 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238241 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057735 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057718 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238237 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238233 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238240 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238230 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057720 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P04057725 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P24238244 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057751 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057749 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057754 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057725 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057720 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057709 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057740 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057763 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057735 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057722 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057764 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057717 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057713 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057723 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057707 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057737 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057752 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15715731 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057758 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057730 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057741 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057761 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057715 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057714 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057760 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057757 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057759 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057733 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057729 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057744 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P04057746 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Transcriptome Array 2.0 | TC0500011335.hg.1 | ENST00000459004.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0500011335.hg.1 | NR_003139.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR05021223.hg.1 | ENST00000459004.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR05021223.hg.1 | NR_003139.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR05021223.hg.1 | TC05001554.hg.1 | HTA TC |
| Affymetrix Human Clariom D Assay | PSR0500178527.hg.1 | ENST00000459004.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0500178527.hg.1 | NR_003139.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0500178527.hg.1 | TC0500011335.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0500178527.hg.1 | NR_003139.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0500178527.hg.1 | ENST00000459004.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0500011335.hg.1 | ENST00000459004.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0500011335.hg.1 | NR_003139.1 | Refseq |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A027056 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A027056 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3241373 | NR_003139.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3241373 | AM055742.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3241373 | NR_003139.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3241373 | AM055742.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3241373 | NR_003139.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3241373 | AM055742.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3241373 | NR_003139.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3241373 | AM055742.1 | human_transcriptome |
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