RNU4ATAC
Genomic Map
Back To TopAssay Details
| Gene Symbol: RNU4ATAC | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_023343.1 | 1 | 69 | 98 | ||
| GenBank mRNA | U62822.1 | - | 1 | 69 | 98 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | transcription factor CP2-like 1 | TFCP2L1 |
CRTR1, LBP-9, LBP9 |
-245.7kb | Anti-sense | Chr. 2 - 121216587 - 121285210 on NCBI Build GRCh38 |
| Downstream | NIFK antisense RNA 1 | NIFK-AS1 | 118.6kb | Sense | Chr. 2 - 121649654 - 121728560 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0200009125.hg.1This assay targets the same location as HTA transcript cluster(s) TC02000767.hg.1
Set Membership: |
Amplicon length between 86 and 100
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4421 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4422 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559771 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444550 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559734 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559758 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559726 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559739 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444519 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559761 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559733 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15317158 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559727 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444518 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15317162 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444541 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559732 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444524 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559782 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444562 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444548 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559740 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559769 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444526 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444569 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559768 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559738 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444545 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444539 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559750 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559746 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559764 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444534 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559770 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559754 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559779 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559768 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444569 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559771 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444518 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559758 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444552 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15317158 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559732 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444534 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444526 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559769 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444560 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444557 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559727 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444548 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444519 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559733 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444541 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559746 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559740 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444524 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559764 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559754 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559782 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559750 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559739 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444550 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444545 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444555 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15317162 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559734 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444571 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559738 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559761 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444539 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01444562 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559770 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559779 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P21559726 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444525 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444528 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317172 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444568 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444519 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444545 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444556 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444565 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317169 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444547 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444572 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444512 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444559 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444570 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444523 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444555 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444538 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444548 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444532 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444518 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317158 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317164 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317171 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317162 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444534 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444514 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444551 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444552 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444563 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444542 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01444550 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15317160 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | 8044962 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8044961 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | TC0200009125.hg.1 | ENST00000580972.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0200009125.hg.1 | NR_023343.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR02012010.hg.1 | TC02000767.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR02012010.hg.1 | ENST00000385771.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR02012010.hg.1 | NR_023343.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC0900006967.hg.1 | ENST00000516415.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1200006452.hg.1 | ENST00000408512.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0100014511.hg.1 | ENST00000516307.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0500008348.hg.1 | ENST00000515932.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1100009326.hg.1 | ENST00000517226.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0600013760.hg.1 | ENST00000516179.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0200009125.hg.1 | ENST00000580972.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0200009125.hg.1 | NR_023343.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0500008348.hg.1 | ENST00000515932.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0900006967.hg.1 | ENST00000516415.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0600013760.hg.1 | ENST00000516179.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1200006452.hg.1 | ENST00000408512.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1100009326.hg.1 | ENST00000517226.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200163985.hg.1 | ENST00000580972.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200163985.hg.1 | NR_023343.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200163985.hg.1 | ENST00000580972.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200163985.hg.1 | NR_023343.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200163985.hg.1 | TC0200009125.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | TC0100014511.hg.1 | ENST00000516307.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3240594 | NR_023343.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3240594 | NR_023343.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3240594 | NR_023343.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3240594 | NR_023343.1 | human_transcriptome |
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