Hs04273348_s1

Gene Symbol:

MIR647 UCKL1

Gene Name:

microRNA 647

uridine-cytidine kinase 1 like 1

Gene Aliases:

MIRN647, hsa-mir-647

UCK1L, URKL1

Chromosome Location:

Chr.20: 63942631 - 63942726 on Build GRCh38

Chromosome Location:

Chr.20: 63939829 - 63959435 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: MIR647
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_030377.1		1	50		72

Gene Symbol: UCKL1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011528873.2	XP_011527175.1	8	2294		72
GenBank mRNA	AK128082.1	-	1			72

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI006021.1	-	1			Chr. 20 - 63942504 - 63942886 [+] on Build GRCh38	72
GenBankmRNA	DB066850.1	-	1			Chr. 20 - 63942493 - 63943006 [+] on Build GRCh38	72

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	microRNA 1914	MIR1914	MIRN1914, hsa-mir-1914	-1.1kb	Sense	Chr. 20 - 63941465 - 63941544 on NCBI Build GRCh38
Downstream	UCKL1 antisense RNA 1	UCKL1-AS1	UCKL1-AS, UCKL1AS, UCKL1OS	10.7kb	Anti-sense	Chr. 20 - 63953384 - 63956985 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay is designed to target a precursor miRNA (pre-miRNA) target. It may not discriminate between the primary transcript (pri-miRNA) and the pre-miRNA for this miRNA. If you are looking for an assay to detect the mature miRNA, please search the MicroRNA collection of assays.
This assay targets the same location as Clariom D transcript cluster(s) TC2000009849.hg.1
This assay targets the same location as HTA transcript cluster(s) TC20001042.hg.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

nucleotide kinase

Gene Ontology Categories:

Process(es)

pyrimidine nucleobase metabolic process
viral process
phosphorylation
pyrimidine nucleoside salvage
UMP salvage
CTP salvage

Function(s)

uridine kinase activity
protein binding
ATP binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919939	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267849	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267865	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267859	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267863	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267855	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267830	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267833	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919936	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919927	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267835	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267831	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919930	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267839	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267858	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919947	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267841	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919916	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267832	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919938	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267845	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P17212373	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267856	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267837	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267828	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919933	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P17212373	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919927	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267835	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267828	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267837	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919930	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919938	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267855	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267856	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267830	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919936	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267832	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267863	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267831	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267841	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267849	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919939	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919933	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267865	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267833	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267859	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919916	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267845	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267858	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P31919947	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P11267839	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC2000009849.hg.1	ENST00000384823.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2000009849.hg.1	NR_030377.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR20014311.hg.1	ENST00000384823.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR20014311.hg.1	NR_030377.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR20014311.hg.1	TC20001042.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC2000009849.hg.1	ENST00000384823.1	Ensembl
Affymetrix Human Clariom D Assay	TC2000009849.hg.1	NR_030377.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000168777.hg.1	ENST00000384823.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2000168777.hg.1	NR_030377.1	Refseq
Affymetrix Human Clariom D Assay	PSR2000168777.hg.1	TC2000009849.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2000168777.hg.1	ENST00000384823.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2000168777.hg.1	NR_030377.1	Refseq

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3309254	NR_030377.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3309254	NR_030377.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3309254	NR_030377.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3309254	NR_030377.1	human_transcriptome