Name: [Hs04332293_s1] [NIPBL-AS1]
Creator: Thermo Fisher Scientific
Keywords: [NIPBL-AS1] Assay, [NIPBL antisense RNA 1 (head to head)] Assay

Assay Details

Gene Symbol: NIPBL-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_046262.1		1	5219		80
GenBank mRNA	AI800212.1	-	1			80

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CX782531.1	-	1		Chr. 5 - 36871364 - 36872066 [+] on Build GRCh38	80
GenBankmRNA	BE350752.1	-	1		Chr. 5 - 36871361 - 36871823 [+] on Build GRCh38	80
GenBankmRNA	AV753237.1	-	1	781	Chr. 5 - 36871361 - 36872106 [-] on Build GRCh38	80
GenBankmRNA	BF734993.1	-	1		Chr. 5 - 36871151 - 36871559 [+] on Build GRCh38	80
GenBankmRNA	BX106017.1	-	1		Chr. 5 - 36871361 - 36871855 [+] on Build GRCh38	80
GenBankmRNA	AI873320.1	-	1		Chr. 5 - 36871361 - 36871620 [+] on Build GRCh38	80
GenBankmRNA	AI286236.1	-	1		Chr. 5 - 36871361 - 36871798 [+] on Build GRCh38	80
GenBankmRNA	DB309142.1	-	1		Chr. 5 - 36871364 - 36871911 [+] on Build GRCh38	80
GenBankmRNA	AI921947.1	-	1		Chr. 5 - 36871361 - 36871799 [+] on Build GRCh38	80
GenBankmRNA	AI051298.1	-	1		Chr. 5 - 36871361 - 36871729 [+] on Build GRCh38	80
GenBankmRNA	DB528963.1	-	1	354	Chr. 5 - 36871369 - 36871830 [-] on Build GRCh38	80

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	solute carrier family 1 member 3	SLC1A3	EA6, EAAT1, GLAST, GLAST1	-183.0kb	Anti-sense	Chr. 5 - 36606355 - 36688334 on NCBI Build GRCh38
Downstream	NIPBL, cohesin loading factor	NIPBL	CDLS, CDLS1, IDN3, IDN3-B, Scc2	65.0	Anti-sense	Chr. 5 - 36876759 - 37065819 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500010508.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047067	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875236	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875230	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047054	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047062	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047039	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875194	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047047	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047035	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875244	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875205	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047022	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047052	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875219	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875223	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875225	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047030	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047034	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047061	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047050	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047041	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047056	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875241	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047069	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047045	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047049	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875199	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875197	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047033	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047029	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047043	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875213	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875198	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047066	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875243	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047028	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875216	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P24047042	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P03875234	-	-
Agilent SurePrint G3 Human CGH Microarray 4x180K	143566	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	609824	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	590855	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	522157	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	933038	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	240712	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_32_P126410	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	9099	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	46626	-	-
Agilent Human Genome CGH + SNP Microarray	A_16_P17089989	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3419865	-	-
Whole Human Genome Oligo Microarray G4112A	A_32_P126410	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_16_P17089989	-	-
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	104195	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P37149727	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P01213878	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P17089989	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P01213873	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P37149761	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P17089976	-	-
Agilent Human 1B Microarray G4111A	A_32_P126410	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_16_P37149727	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_16_P17089989	-	-
Agilent SurePrint G3 Human CGH Microarray 2x400K	A_16_P01213878	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR0500173173.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173173.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173173.hg.1	TC0500010508.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500173172.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173172.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173172.hg.1	TC0500010508.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500173174.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173174.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173174.hg.1	TC0500010508.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500173175.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173175.hg.1	NR_046262.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500173175.hg.1	TC0500010508.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_1751847	-	-
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1751847	-	-
Illumina human-6 v2.0 expression beadchip	ILMN_1751847	-	-
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1751847	-	-
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1751847	-	-

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Catalog #	4426961
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System Message

Genomic Map