Hs04333177_s1

Gene Symbol:

LOC100130744 OTULIN

Gene Name:

uncharacterized LOC100130744

OTU deubiquitinase with linear linkage specificity

Gene Aliases:

-

FAM105B, GUM

Chromosome Location:

Chr.5: 14712694 - 14716529 on Build GRCh38

Chromosome Location:

Chr.5: 14660794 - 14716552 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: LOC100130744
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_046285.1		1	2013		66
GenBank mRNA	AF289590.1	-	1	2033		66

Gene Symbol: OTULIN
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011514151.2	XP_011512453.1	8	7122		66

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BX507119.1	-	1	75		Chr. 5 - 14714632 - 14715242 [+] on Build GRCh38	66

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ANKH inorganic pyrophosphate transport regulator	ANKH	ANK, CCAL2, CMDJ, CPPDD, HANK, MANK		Anti-sense	Chr. 5 - 14704800 - 14871778 on NCBI Build GRCh38
Downstream	microRNA 4637	MIR4637		110.7kb	Anti-sense	Chr. 5 - 14825929 - 14826012 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500006823.hg.1

Additional Information:

This assay is in the 5'UTR region of the AF289590.1 transcripts.

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Detect Genomic DNA, Homo sapiens, 1700, Both primers and probe map within a single exon

Gene Ontology Categories:

Process(es)

sprouting angiogenesis
regulation of tumor necrosis factor-mediated signaling pathway
negative regulation of NF-kappaB transcription factor activity
innate immune response
negative regulation of inflammatory response
canonical Wnt signaling pathway
nucleotide-binding oligomerization domain containing 2 signaling pathway
protein linear deubiquitination

Function(s)

thiol-dependent deubiquitinase
protein binding
cysteine-type peptidase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Human Genome Microarray 4x44K v2	A_24_P298495	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_24_P298495	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	15118	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	32540	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_24_P298495	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	XM_001720249_at	-	-
Affymetrix Human Gene 1.0 ST Array	XM_001724061_at	-	-
Affymetrix Human Gene 1.0 ST Array	XM_001721727_at	-	-
Affymetrix Human Gene 1.0 ST Array	8104591	-	-
Affymetrix Human Gene 1.1 ST Array	8104590	-	-
Affymetrix HT HG-U133+ PM Array Plate	236228_PM_at	-	-
Affymetrix Human Clariom D Assay	PSR0500146545.hg.1	NR_046285.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500146545.hg.1	TC0500006823.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500146545.hg.1	NR_046285.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500146546.hg.1	NR_046285.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500146546.hg.1	TC0500006823.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0500146546.hg.1	NR_046285.1	Refseq
Human Genome U133 Plus 2.0 Array	236228_PM_at	-	-
Human Genome U133 Plus 2.0 Array	236228_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	236228_at3	-	-
Human Genome U95 Set	75558_at	-	-
Human Genome U95 Set	75558_PM_at	-	-
Human Genome U133 Set	236228_PM_at	-	-
Human Genome U133 Set	236228_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	220476	-	-