SCARNA20
Genomic Map
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| Gene Symbol: SCARNA20 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_002999.2 | 1 | 78 | 107 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | ubiquitin specific peptidase 32 | USP32 |
NY-REN-60, USP10 |
Sense | Chr. 17 - 60177231 - 60422470 on NCBI Build GRCh38 | |
| Downstream | chromosome 17 open reading frame 64 | C17orf64 | 189.4kb | Anti-sense | Chr. 17 - 60421091 - 60431426 on NCBI Build GRCh38 |
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Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1700011314.hg.1This assay targets the same location as HTA transcript cluster(s) TC17001762.hg.1
Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4016 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4015 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979724 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400092 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979727 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979741 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400089 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400083 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979738 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979729 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979726 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400086 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979725 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979730 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979736 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979732 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400086 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979738 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979724 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979726 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979727 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979725 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979729 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979732 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979736 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979742 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979741 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P30979730 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400083 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400089 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10400092 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400096 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400083 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400088 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400090 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400074 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400078 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400092 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400081 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400080 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400076 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400094 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10400085 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Genome U219 Array | 11757263_x_at | - | - |
| Affymetrix Human Genome U219 Array | 11763957_PM_at | - | - |
| Affymetrix Human Genome U219 Array | 11757262_at | - | - |
| Affymetrix Human Genome U219 Array | 11763957_at | - | - |
| Affymetrix Human Genome U219 Array | 11757263_PM_x_at | - | - |
| Affymetrix Human Genome U219 Array | 11757262_PM_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR17023539.hg.1 | ENST00000516768.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR17023539.hg.1 | NR_002999.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR17023539.hg.1 | TC17001762.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC1700011314.hg.1 | ENST00000516768.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1700011314.hg.1 | NR_002999.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700191228.hg.1 | ENST00000516768.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1700191228.hg.1 | NR_002999.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700191228.hg.1 | ENST00000516768.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1700191228.hg.1 | NR_002999.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1700191228.hg.1 | TC1700011314.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | TC1700011314.hg.1 | ENST00000516768.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1700011314.hg.1 | NR_002999.2 | Refseq |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A008657 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A008657 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3245471 | NR_002999.2 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3245471 | NR_002999.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3245471 | NR_002999.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3245471 | NR_002999.2 | human_transcriptome |
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