Hs04401906_m1

• Gene Symbol: HACE1
• Gene Name: HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
• Gene Aliases: SPPRS
• Chromosome Location: Chr.6: 104682670 - 104859919 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: HACE1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_104424.1		16 - 17	2040		100

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CN358104.1	-	3 - 4	416		Chr. 6 - 104777012 - 104784641 [-] on Build GRCh38	100

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	glutamate ionotropic receptor kainate type subunit 2	GRIK2	EAA4, GLR6, GLUK6, GLUR6, GluK2, MRT6	-2.7mb	Anti-sense	Chr. 6 - 101393708 - 102070083 on NCBI Build GRCh38
Downstream	LIN28B antisense RNA 1	LIN28B-AS1	C6orf220, LINC00577, dJ439I14.1	155.8kb	Sense	Chr. 6 - 104936294 - 104940527 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600012702.hg.1

• Set Membership: Amplicon length between 86 and 100, Homo sapiens, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
Golgi organization
cell cycle
protein ubiquitination
Rac protein signal transduction
regulation of cell migration
protein ubiquitination involved in ubiquitin-dependent protein catabolic process
membrane fusion
protein K48-linked ubiquitination

Function(s)

ubiquitin-protein transferase activity
protein binding
ligase activity
Rab GTPase binding
Rac GTPase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000262903.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000369127.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000416605.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000517424.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000517995.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000518503.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	NM_020771.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	NR_104424.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000262903.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000369127.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000416605.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000517424.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000517995.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	ENST00000518503.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	NM_020771.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	NR_104424.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600187581.hg.1	TC0600012702.hg.1	Clariom D TC