Hs04404247_m1

• Gene Symbol: LIG1
• Gene Name: DNA ligase 1
• Gene Aliases: -
• Chromosome Location: Chr.19: 48115445 - 48170603 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LIG1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110296.1		24 - 25	3800		80
	NR_135497.1		24 - 25	3803		80
	NR_135498.1		22 - 23	3632		80
	NR_135499.1		23 - 24	3713		80
	NR_135500.1		24 - 25	3980		80

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	W17179.1	-		50		Chr. - - [-] on Build	80

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	phospholipase A2 group IVC	PLA2G4C	CPLA2-gamma	-8.3kb	Sense	Chr. 19 - 48047843 - 48111445 on NCBI Build GRCh38
Downstream	chromosome 19 open reading frame 68	C19orf68		49.3kb	Anti-sense	Chr. 19 - 48170662 - 48197621 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1900011060.hg.1

• Set Membership: Amplicon length between 71 and 85, Homo sapiens, Probe spans exons

Gene Ontology Categories:

Process(es)

telomere maintenance via recombination
DNA metabolic process
DNA repair
transcription-coupled nucleotide-excision repair
base-excision repair
nucleotide-excision repair, DNA gap filling
mismatch repair
anatomical structure morphogenesis
V(D)J recombination
DNA ligation involved in DNA repair
cell division
DNA biosynthetic process
Okazaki fragment processing involved in mitotic DNA replication

Function(s)

DNA binding
DNA ligase activity
DNA ligase (ATP) activity
ATP binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000263274.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000427526.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000536218.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000594067.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000594759.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000601091.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000613670.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_000234.2	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_001289063.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_001289064.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NR_110296.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	TC1900011060.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000263274.11	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000427526.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000536218.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000594067.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000594759.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000601091.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	ENST00000613670.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_000234.2	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_001289063.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NM_001289064.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900192269.hg.1	NR_110296.1	Refseq