Hs04405438_m1

• Gene Symbol: PDE6D
• Gene Name: phosphodiesterase 6D
• Gene Aliases: JBTS22, PDED
• Chromosome Location: Chr.2: 231732425 - 231781327 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PDE6D
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110994.1		1 - 2	258		82
	XM_011511342.1	XP_011509644.1	1 - 2	213		82
GenBank mRNA	AK311623.1	-	1 - 2	210		82
	HY037751.1	-	1 - 2	259		82

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	HY016909.1	-	1 - 2	222		Chr. 2 - 231779189 - 231781291 [-] on Build GRCh38	84
GenBankmRNA	BX346036.2	-	1 - 2	208		Chr. 2 - 231778866 - 231781273 [-] on Build GRCh38	82
GenBankmRNA	HY005283.1	-	1 - 2	210		Chr. 2 - 231779276 - 231781279 [-] on Build GRCh38	84
GenBankmRNA	DB158252.1	-	1 - 2	213		Chr. 2 - 231779126 - 231781282 [-] on Build GRCh38	82
GenBankmRNA	BI830294.1	-	1 - 2	283		Chr. 2 - 231779014 - 231781275 [-] on Build GRCh38	82
GenBankmRNA	HY083770.1	-	1 - 2	225		Chr. 2 - 231779251 - 231781292 [-] on Build GRCh38	84
GenBankmRNA	DB087740.1	-	1 - 2	212		Chr. 2 - 231779170 - 231781279 [-] on Build GRCh38	82

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	prothymosin, alpha	PTMA	TMSA	-65.2kb	Anti-sense	Chr. 2 - 231708525 - 231713541 on NCBI Build GRCh38
Downstream	COP9 signalosome subunit 7B	COPS7B	CSN7B, SGN7b	344.0	Anti-sense	Chr. 2 - 231781671 - 231809253 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200016039.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_011511342.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, Homo sapiens, Probe spans exons

Panther Classification:

Molecular Function -

hydrolase, phosphodiesterase, metabolite interconversion enzyme

Gene Ontology Categories:

Process(es)

visual perception
negative regulation of GTPase activity
response to stimulus

Function(s)

3',5'-cyclic-nucleotide phosphodiesterase activity
GTPase inhibitor activity
protein binding
Rab GTPase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NR_110994.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NR_110994.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0200016039.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217859.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217859.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217859.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217859.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217859.hg.1	TC0200016039.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217861.hg.1	TC0200016039.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200217862.hg.1	TC0200016039.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000287600.8	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000409772.5	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000428104.2	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000477748.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	ENST00000486044.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_001291018.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NM_002601.3	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NR_110994.1	Refseq
Affymetrix Human Clariom D Assay	TC0200016039.hg.1	NR_110994.1	Refseq