Hs05000078_m1 Best Coverage

• Gene Symbol: TDG
• Gene Name: thymine DNA glycosylase
• Gene Aliases: hTDG
• Chromosome Location: Chr.12: 103965815 - 103988878 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: TDG
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_003211.4	NP_003202.3	4 - 5	699		65
	XM_005269125.1	XP_005269182.1	4 - 5	559		65
	XM_011538714.1	XP_011537016.1	3 - 4	529		65
	XM_011538715.1	XP_011537017.1	3 - 4	529		65
GenBank mRNA	AK295387.1	-	2 - 3	186		65
	AK303631.1	-	3 - 4	526		65
	AK309792.1	-	5 - 6	743		65
	AK313234.1	-	4 - 5	642		65
	BC019925.1	-	4 - 5	653		65
	BC037557.1	-	4 - 5	652	5184772	65

More Information

Additional Information:

This assay is in the 5'UTR region of the AK295387.1, XM_005269125.1, XM_011538715.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Homo sapiens, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene TDG

Panther Classification:

Molecular Function -

DNA metabolism protein, DNA glycosylase, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
base-excision repair
base-excision repair, AP site formation
mismatch repair
transcription, DNA-templated
embryo development
covalent chromatin modification
protein sumoylation
negative regulation of protein binding
oxidative DNA demethylation
negative regulation of chromatin binding
regulation of gene expression, epigenetic
depyrimidination
DNA demethylation

Function(s)

RNA polymerase II transcription cofactor activity
damaged DNA binding
double-stranded DNA binding
uracil DNA N-glycosylase activity
protein kinase C binding
protein binding
pyrimidine-specific mismatch base pair DNA N-glycosylase activity
DNA N-glycosylase activity
mismatched DNA binding
SUMO binding
protein homodimerization activity
structure-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000266775.13	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000392872.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000401157.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000436021.6	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000536395.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000536395.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000536395.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000537100.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000540956.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000542926.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544060.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000544861.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000545698.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000545698.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000545698.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000545698.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	ENST00000545698.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200008669.hg.1	NM_003211.4	Refseq