Hs05359852_g1

Gene Symbol:

TRIM56 C11orf72 FKSG49 HELLPAR LOC100506634 NEK5 SLC38A9 TDRKH

Gene Name:

tripartite motif containing 56

chromosome 11 open reading frame 72

FKSG49

HELLP associated long non-coding RNA

hepatocellular carcinoma-associated antigen HCA25a

NIMA related kinase 5

solute carrier family 38 member 9

tudor and KH domain containing

Gene Aliases:

RNF109

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FKSG52, FKSG55, FKSG56, FKSG57, FKSG60, FKSG61, FKSG64, FKSG65, FKSG66, FKSG67, FKSG68, FKSG70

LINC-HELLP, lncHELLP

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URLC11

TDRD2

Chromosome Location:

Chr.7: 101085424 - 101097967 on Build GRCh38

Chromosome Location:

Chr.11: 67602880 - 67606706 on Build GRCh38

Chromosome Location:

-

Chromosome Location:

-

Chromosome Location:

Chr.19: 58403223 - 58408466 on Build GRCh38

Chromosome Location:

Chr.13: 52064762 - 52129092 on Build GRCh38

Chromosome Location:

Chr.5: 55625845 - 55712344 on Build GRCh38

Chromosome Location:

Chr.1: 151769354 - 151790576 on Build GRCh38

Species:

Human

Species Specific ID (Flybase ID):

-

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-

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Assay Details

Gene Symbol: TRIM56
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_011516589.2	XP_011514891.1	2	5962		78

Gene Symbol: C11orf72
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_130935.1		3	1210		78

Gene Symbol: FKSG49
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AF336882.1	-	1			78
	AF336883.1	-	1			78
	AF338190.1	-	1			78
	AF338193.1	-	1			78
	AF338194.1	-	1			78
	AF338195.1	-	1			78
	AF469044.1	-	1			78

Gene Symbol: HELLPAR
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	JX088243.1	-	1			78

Gene Symbol: LOC100506634
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AF469043.1	-	2	2656		78

Gene Symbol: NEK5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AK126330.1	-	9			78

Gene Symbol: SLC38A9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AK128743.1	-		2929		78

Gene Symbol: TDRKH
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
GenBank mRNA	AK225160.1	-	15	3492		78

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AK096805.1	-	1	1317		Chr. 20 - 35262214 - 35264187 [-] on Build GRCh38	78
GenBankmRNA	BC034305.1	-	2	1363		Chr. 20 - 17778326 - 17780095 [+] on Build GRCh38	78
GenBankmRNA	AK098742.1	-				Chr. - - [-] on Build	78
GenBankmRNA	AK056289.1	-	5	1778		Chr. 7 - 68047970 - 68084254 [+] on Build GRCh38	78

More Information

Additional Information:

This assay is in the 5'UTR region of the AF336882.1, AF336883.1, AF338190.1, AF338193.1, AF338194.1, AF338195.1, AF469044.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Gene Ontology Categories:

Process(es)

regulation of type I interferon production
interferon-beta production
response to type I interferon
defense response to virus
protein K63-linked ubiquitination

Function(s)

ubiquitin-protein transferase activity
zinc ion binding
ligase activity
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_32_P516215	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	43413	-	-
Whole Human Genome Oligo Microarray G4112A	A_32_P516215	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_32_P516215	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P21046817	-	-
Agilent Human 1B Microarray G4111A	A_32_P516215	-	-