Assay Details

Gene Symbol: CCR5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_000579.3	NP_000570.1	3	415		72
RefSeq	NM_001100168.1	NP_001093638.1	3	180		72
GenBank mRNA	AF011500.1	-	1	62		72
	AF011501.1	-	1	62		72
	AF011502.1	-	1	62		72
	AF011503.1	-	1	62		72
	AF011504.1	-	1			72
	AF011506.1	-	1	62		72
	AF011507.1	-	1	62		72
	AF011508.1	-	1	62		72
	AF011509.1	-	1	62		72
	AF011510.1	-	1	62		72
	AF011511.1	-	1	62		72
	AF011512.1	-	1	62		72
	AF011513.1	-	1	62		72
	AF011514.1	-	1	62		72
	AF011515.1	-	1	62		72
	AF011516.1	-	1	62		72
	AF011517.1	-	1	62		72
	AF011518.1	-	1	62		72
	AF011519.1	-	1	62		72
	AF011520.1	-	1	62		72
	AF011521.1	-	1	62		72
	AF011522.1	-	1	62		72
	AF011523.1	-	1	62		72
	AF011524.1	-	1	62		72
	AF011525.1	-	1	62		72
	AF011526.1	-	1	62		72
	AF011527.1	-	1	62		72
	AF011528.1	-	1	62		72
	AF011529.1	-	1	62		72
	AF011530.1	-	1	62		72
	AF011531.1	-	1	62		72
	AF011532.1	-	1	62		72
	AF011533.1	-	1	62		72
	AF011534.1	-	1	62		72
	AF011535.1	-	1	62		72
	AF011536.1	-	1	62		72
	AF011537.1	-	1	62		72
	AK292132.1	-	2	112		72
	AK314882.1	-	2	204		72
	BC038398.1	-	2	101	5186388	72
	DA818906.1	-	2	204		72
	U54994.1	-	2	112		72
	U57840.1	-	2	84		72

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300007257.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03000256.hg.1

Additional Information:

This assay is in the 5'UTR region of the AF011504.1 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length between 71 and 85

G-protein coupled receptor

Mammalian Gene Collection

Detect Genomic DNA

Recommended Assay

Homo sapiens

1700

Inventoried

Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CCR5

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	32018	-	-
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M	854542	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	260891	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	100643	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	396262	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	381695	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	156287	-	-
Agilent SurePrint G3 Human CNV Microarray 2x400K	378141	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_23_P412321	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_23_P412321	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	28109	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	44529	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	21912	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	39478	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	18013	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	34261	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	38199	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	31487	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	9269	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	28278	-	-
Agilent Human Genome CGH Microarray 44B	A_14_P120183	-	-
Agilent Human Genome CGH Microarray 44B	A_14_P128213	-	-
Agilent Human Genome CGH Microarray 44A	A_14_P120183	-	-
Agilent Human Genome CGH Microarray 44A	A_14_P128213	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	17160	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	15993	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	12392	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	32932	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	19478	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	20277	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	25328	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	12987	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	37425	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	31063	-	-
Agilent Human Genome CGH + SNP Microarray	A_14_P120183	-	-
Agilent Human Genome CGH + SNP Microarray	A_14_P120183	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_23_P412321	-	-
SurePrint G3 Human GE Microarray G4851A	A_23_P412321	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3259077	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P02214361	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15433467	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15433467	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P02214361	-	-
Whole Human Genome Oligo Microarray G4112A	A_23_P412321	-	-
Agilent Human Promoter ChIP-on-Chip A)	A_17_P02214361	-	-
Agilent Human Genome CGH Microarray 4x44K	A_14_P120183	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_23_P412321	-	-
Custom Human Agilent Array 11k, Chromosome 6, Expression	2692	-	-
Custom Human Agilent Array 11k, Chromosome 6, Expression	8658	-	-
Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522	3766	-	-
Agilent HD CGH Microarray (2X105K) Oxford design AMADID#019015	22409	-	-
Agilent HD CGH Microarray (2X105K) Oxford design AMADID#019015	102123	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NM_000579_at	-	-
Affymetrix Human Gene 1.0 ST Array	NM_001100168_at	-	-
Affymetrix Human Gene 1.0 ST Array	8093303	-	-
Affymetrix Human Gene 1.0 ST Array	8079406	-	-
Affymetrix Human Gene 1.0 ST Array	8093299	-	-
Affymetrix Human Gene 1.0 ST Array	8093300	-	-
Affymetrix Human Gene 1.0 ST Array	8079402	-	-
Affymetrix Human Gene 1.0 ST Array	8079405	-	-
Affymetrix Human Gene 1.0 ST Array	8079404	-	-
Affymetrix Human Gene 1.0 ST Array	8093302	-	-
Affymetrix Human Gene 1.0 ST Array	8079403	-	-
Affymetrix Human Gene 1.0 ST Array	8093301	-	-
Affymetrix Human Gene 1.1 ST Array	8093298	-	-
Affymetrix Human Gene 1.1 ST Array	8079401	-	-
Affymetrix HT HG-U133+ PM Array Plate	206991_PM_s_at	-	-
Affymetrix Human Genome U219 Array	11748062_s_at	-	-
Affymetrix Human Genome U219 Array	11730909_s_at	-	-
Affymetrix Human Genome U219 Array	11730909_PM_s_at	-	-
Affymetrix Human Genome U219 Array	11748062_PM_s_at	-	-
Affymetrix Human Genome U219 Array	11730910_PM_s_at	-	-
Affymetrix Human Genome U219 Array	11730910_s_at	-	-
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	TC03000256.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	ENST00000343801.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	ENST00000400886.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	NM_000579.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03005209.hg.1	NM_001100168.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	TC03000256.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	ENST00000343801.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	ENST00000400886.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	ENST00000445772.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	NM_000579.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03005208.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151430.hg.1	TC0300007257.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	ENST00000445772.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	ENST00000445772.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151427.hg.1	TC0300007257.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	ENST00000445772.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	ENST00000292303.4	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	ENST00000445772.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	NM_000579.3	Refseq
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	NM_001100168.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300151429.hg.1	TC0300007257.hg.1	Clariom D TC
Human Genome U133 Plus 2.0 Array	206991_s_at	-	-
Human Genome U133 Plus 2.0 Array	206991_PM_s_at	-	-
Human Genome U133A 2.0 Array	206991_PM_s_at	-	-
Human Genome U133A 2.0 Array	206991_s_at	-	-
AffymetrixPathwork Diagnostics Pathchip	pw596078	-	-
Human Genome U95 Set	36724_PM_s_at	-	-
Human Genome U95 Set	36724_s_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at2	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	206991_s_at5	-	-
Human Genome U133 Set	206991_PM_s_at	-	-
Human Genome U133 Set	206991_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A001770	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A022559	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A022559	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A001770	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Human Genome Survey Microarray Version 2.0	180503	-	-

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_1653395	U54994.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1653395	U57840.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1653395	AK292132.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1653395	BC038398.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_1653395	DA818906.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2145033	BC038398.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2145033	NM_001100168.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1653395	U54994.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1653395	U57840.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1653395	AK292132.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1653395	BC038398.1	human_transcriptome
Illumina HumanWG-6 v2.0 expression beadchip	ILMN_1653395	DA818906.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1653395	U54994.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1653395	U57840.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1653395	AK292132.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1653395	BC038398.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_1653395	DA818906.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Sentrix Human-6 Expression BeadChip	GI_4502638-S	U54994.1	human_transcriptome
Sentrix Human-6 Expression BeadChip	GI_4502638-S	BC038398.1	human_transcriptome
Sentrix Human-6 Expression BeadChip	GI_4502638-S	NM_001100168.1	human_transcriptome
Sentrix Human-6 Expression BeadChip	GI_4502638-S	NM_000579.3	human_transcriptome
Illumina HumanRef-8 v2 Expression BeadChip	GI_21020-S	-	-
Illumina human-6 v1.0 expression beadchip	0006590601	-	-
Illumina humanRef-8 v1.0 expression beadchip	0006590601	-	-
Illumina Sentrix Human-6 v2 Expression BeadChip	5570270	-	-
Illumina HumanRef-6 v2.0 expression beadchip	ILMN_21020	-	-
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanRef-8 v3.0 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1653395	U54994.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1653395	U57840.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1653395	AK292132.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1653395	BC038398.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_1653395	DA818906.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanWG-6 v3.0 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1653395	U54994.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1653395	U57840.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1653395	AK292132.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1653395	BC038398.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_1653395	DA818906.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanHT-12 V3.0 expression beadchip	ILMN_2145033	NM_000579.3	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1653395	U54994.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1653395	U57840.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1653395	AK292132.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1653395	BC038398.1	human_transcriptome
Illumina HumanWG-6_V2_0_R2	ILMN_1653395	DA818906.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2145033	BC038398.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2145033	NM_001100168.1	human_transcriptome
Illumina HumanRef-8 WG-DASL v3.0	ILMN_2145033	NM_000579.3	human_transcriptome

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Catalog #	4331182
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Genomic Map