Mm00432449_m1

• Gene Symbol: Cdx2
• Gene Name: caudal type homeobox 2
• Gene Aliases: Cdx-2
• Chromosome Location: Chr.5: 147300900 - 147307249 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdx2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_007673.3	NP_031699.2	1 - 2	809		88
GenBank mRNA	AK049566.1	-	1 - 2	810		88
	AK049574.1	-	1 - 2	681		88
	BC103516.1	-	1 - 2	687	40039012	88
	BC103517.1	-	1 - 2	690	40039015	88
	BC103519.1	-	1 - 2	690	40039019	88
	BC103520.1	-	1 - 2	690	40039017	88
	S74520.1	-	1 - 2	804		88

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0500003624.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Mus musculus, Mouse Stem Cell Pluripotency, Inventoried, Mouse_Stem_Cell, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdx2

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
blood vessel development
blastocyst development
trophectodermal cell differentiation
placenta development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
multicellular organism development
pattern specification process
positive regulation of cell proliferation
endosome to lysosome transport
anterior/posterior pattern specification
cell differentiation
somatic stem cell population maintenance
establishment or maintenance of epithelial cell apical/basal polarity
positive regulation of cell differentiation
positive regulation of transcription, DNA-templated
labyrinthine layer development

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
protein binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0500033257.mm.1	TC0500003624.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500033257.mm.1	NM_007673.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500033257.mm.1	NM_007673.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0500033258.mm.1	TC0500003624.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500033258.mm.1	NM_007673.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500033258.mm.1	NM_007673.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0500033260.mm.1	TC0500003624.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0500033260.mm.1	NM_007673.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0500033260.mm.1	NM_007673.3	Refseq