Mm00441891_m1 Best Coverage

• Gene Symbol: Cd40
• Gene Name: CD40 antigen
• Gene Aliases: AI326936, Bp50, GP39, HIGM1, IGM, IMD3, T-BAM, TRAP, Tnfrsf5, p50
• Chromosome Location: Chr.2: 165055604 - 165071654 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cd40
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_011611.2	NP_035741.2	1 - 2	121		68
	NM_170702.2	NP_733803.2	1 - 2	121		68
	NM_170703.2	NP_733804.1	1 - 2	121		68
	NM_170704.2	NP_733805.1	1 - 2	121		68
	NR_027852.1		1 - 2	121		68
GenBank mRNA	AJ401387.1	-	1 - 2	55		68
	AJ401388.1	-	1 - 2	55		68
	AJ401389.1	-	1 - 2	55		68
	AJ401390.1	-	1 - 2	55		68
	AK089861.1	-		74		68
	AK150959.1	-	1 - 2	78		68
	AK151458.1	-	1 - 2	78		68
	AK152716.1	-	1 - 2			68
	AK152756.1	-	1 - 2	77		68
	AK152942.1	-	1 - 2	85		68
	AK156644.1	-	1 - 2	89		68
	AK161978.1	-	1 - 2	78		68
	AK162305.1	-	1 - 2	131		68
	BY259264.1	-	1 - 2	118		68
	BY743050.1	-	1 - 2	77		68
	M83312.1	-	1 - 2	57		68

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200002544.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Mus musculus, Mouse Tumor Metastasis Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cd40

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Process(es)

positive regulation of protein phosphorylation
immune system process
immune response-regulating cell surface receptor signaling pathway
cellular calcium ion homeostasis
inflammatory response
positive regulation of B cell proliferation
positive regulation of interleukin-12 production
B cell activation
positive regulation of tyrosine phosphorylation of Stat1 protein
defense response to protozoan
positive regulation of MAP kinase activity
protein kinase B signaling
positive regulation of GTPase activity
positive regulation of transcription from RNA polymerase II promoter
positive regulation of isotype switching to IgG isotypes
regulation of immune response
regulation of immunoglobulin secretion
positive regulation of NF-kappaB transcription factor activity
defense response to virus
positive regulation of protein kinase C signaling
positive regulation of endothelial cell apoptotic process

Function(s)

antigen binding
protein binding
enzyme binding
ubiquitin protein ligase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_011611.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_011611.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170702.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170702.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170703.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170703.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170704.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NM_170704.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NR_027852.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	NR_027852.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020896.mm.1	TC0200002544.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_011611.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_011611.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170702.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170702.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170703.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170703.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170704.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NM_170704.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NR_027852.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	NR_027852.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020893.mm.1	TC0200002544.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_011611.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_011611.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170702.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170702.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170703.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170703.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170704.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NM_170704.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NR_027852.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	NR_027852.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0200020899.mm.1	TC0200002544.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	920673	-	-