Mm00443079_g1

• Gene Symbol: Pax6
• Gene Name: paired box 6
• Gene Aliases: 1500038E17Rik, AEY11, Dey, Gsfaey11, Pax-6, Sey
• Chromosome Location: Chr.2: 105667518 - 105697364 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pax6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001244198.1	NP_001231127.1	10 - 11	1242		71
	NM_001244200.1	NP_001231129.1	11 - 12	1454		71
	NM_001244201.1	NP_001231130.1	9 - 10	1200		71
	NM_001244202.1	NP_001231131.1	9 - 10	1756		71
	NM_013627.5	NP_038655.1	10 - 11	1798		71
GenBank mRNA	AF443223.1	-	6 - 7	855		71
	AF457141.1	-	4 - 5	521		71
	AJ292077.1	-	9 - 10	1059		71
	AJ307468.1	-	9 - 10	1066		71
	AK028059.1	-	9 - 10	1201		71
	AK045805.1	-	9 - 10	1758		71
	AK139054.1	-		786		71
	AY064175.1	-	5 - 6	665		71
	BC011272.1	-	10 - 11	1486	4008490	71
	BC036957.1	-	9 - 10	1196	4504106	71
	BC069912.1	-	6 - 7	1233		71
	M77842.1	-	5 - 6	785		71
	X63963.1	-	10 - 11	1119		71

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200001583.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pax6

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
establishment of mitotic spindle orientation
blood vessel development
cell fate determination
neural crest cell migration
neuron migration
negative regulation of protein phosphorylation
positive regulation of neuroblast proliferation
epithelial cell development
lens development in camera-type eye
type B pancreatic cell differentiation
pancreatic A cell differentiation
pancreatic A cell development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
smoothened signaling pathway
multicellular organism development
axonogenesis
axon guidance
brain development
salivary gland morphogenesis
negative regulation of cell population proliferation
regulation of asymmetric cell division
dorsal/ventral axis specification
anterior/posterior pattern specification
dorsal/ventral pattern formation
regulation of gene expression
positive regulation of gene expression
regulation of neuron projection development
pallium development
rhombomere morphogenesis
olfactory bulb development
oligodendrocyte cell fate specification
cerebral cortex regionalization
forebrain anterior/posterior pattern specification
forebrain dorsal/ventral pattern formation
commitment of neuronal cell to specific neuron type in forebrain
forebrain-midbrain boundary formation
telencephalon regionalization
pituitary gland development
interkinetic nuclear migration
signal transduction involved in regulation of gene expression
cell differentiation
keratinocyte differentiation
regulation of cell migration
positive regulation of epithelial cell differentiation
forebrain development
hindbrain development
lacrimal gland development
protein localization to organelle
eye photoreceptor cell development
glucose homeostasis
positive regulation of cell fate specification
camera-type eye development
cell fate commitment
regulation of neuron differentiation
negative regulation of neuron differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
regulation of timing of cell differentiation
embryonic camera-type eye morphogenesis
astrocyte differentiation
negative regulation of epithelial cell proliferation
regulation of neurogenesis
retina development in camera-type eye
iris morphogenesis
cornea development in camera-type eye
neural precursor cell proliferation
positive regulation of glucagon secretion
insulin metabolic process
negative regulation of neural precursor cell proliferation
positive regulation of neuron migration

Function(s)

transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
DNA-binding transcription repressor activity, RNA polymerase II-specific
DNA-binding transcription activator activity, RNA polymerase II-specific
DNA binding
minor groove of adenine-thymine-rich DNA binding
chromatin binding
double-stranded DNA binding
DNA-binding transcription factor activity
protein binding
transcription factor binding
protein kinase binding
ubiquitin protein ligase binding
histone acetyltransferase binding
sequence-specific DNA binding
co-SMAD binding
R-SMAD binding
HMG box domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	TC0200001583.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	NM_001244198.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	NM_001244200.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	NM_001244201.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	NM_001244202.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011907.mm.1	NM_013627.6	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	TC0200001583.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	NM_001244198.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	NM_001244200.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	NM_001244201.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	NM_001244202.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200011909.mm.1	NM_013627.6	Refseq