Mm00446088_m1 Best Coverage

• Gene Symbol: Nr5a2
• Gene Name: nuclear receptor subfamily 5, group A, member 2
• Gene Aliases: AU020803, D1Ertd308e, Ftf, LRH-1, UF2-H3B
• Chromosome Location: Chr.1: 136842562 - 136960448 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nr5a2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001159769.2	NP_001153241.1	2 - 3	201		104
	NM_030676.3	NP_109601.1	2 - 3	286		104
GenBank mRNA	AB221629.1	-	2 - 3	128		104
	BB652042.1	-	2 - 3	172		104
	BC137845.1	-	2 - 3	165	8860864	104
	DQ133942.1	-	2 - 3	201		104
	M81385.1	-	2 - 3	286		104

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0100003155.mm.1

Additional Information:

This assay is in the 5'UTR region of the DQ133942.1,NM_001159769.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Nuclear Receptor, Mammalian Gene Collection, Recommended Assay, Mus musculus, Mouse Stem Cell Pluripotency, Inventoried, Mouse_Stem_Cell, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nr5a2

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
bile acid metabolic process
intracellular receptor signaling pathway
epithelial cell differentiation
regulation of cell proliferation
cholesterol homeostasis
steroid hormone mediated signaling pathway
positive regulation of viral genome replication
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
pancreas morphogenesis

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
phospholipid binding
zinc ion binding
lipid binding
sequence-specific DNA binding
transcription regulatory region DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0100025636.mm.1	NM_001159769.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025636.mm.1	NM_001159769.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025636.mm.1	TC0100003155.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100025635.mm.1	NM_001159769.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025635.mm.1	NM_001159769.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025635.mm.1	NM_030676.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025635.mm.1	NM_030676.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025635.mm.1	TC0100003155.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100025638.mm.1	NM_030676.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025638.mm.1	NM_030676.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025638.mm.1	TC0100003155.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100025637.mm.1	NM_030676.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025637.mm.1	NM_030676.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025637.mm.1	TC0100003155.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100025633.mm.1	NM_001159769.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025633.mm.1	NM_001159769.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025633.mm.1	NM_030676.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025633.mm.1	NM_030676.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0100025633.mm.1	TC0100003155.mm.1	MTA TC