Mm00468505_m1 Best Coverage

• Gene Symbol: Hcfc1
• Gene Name: host cell factor C1
• Gene Aliases: AW060991, HCF, HCF1
• Chromosome Location: Chr.X: 73942792 - 73967135 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hcfc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_008224.4	NP_032250.2	5 - 6	1147		63
GenBank mRNA	AJ627036.1	-	2 - 3	313		63
	BC053742.1	-	5 - 6	1105	6509535	63

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0X00002441.mm.1

Additional Information:

This assay is in the 5'UTR region of the AJ627036.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hcfc1

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
cell cycle
positive regulation of gene expression
chromatin modification
release from viral latency
regulation of protein complex assembly
histone H4-K5 acetylation
histone H4-K8 acetylation
histone H4-K16 acetylation
positive regulation of transcription from RNA polymerase II promoter
protein stabilization
regulation of nucleic acid-templated transcription

Function(s)

transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
chromatin binding
transcription coactivator activity
protein binding
identical protein binding
histone acetyltransferase activity (H4-K5 specific)
histone acetyltransferase activity (H4-K8 specific)
histone acetyltransferase activity (H4-K16 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0X00015358.mm.1	NM_008224.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00015358.mm.1	TC0X00002441.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0X00015354.mm.1	NM_008224.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00015354.mm.1	TC0X00002441.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0X00015357.mm.1	NM_008224.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00015357.mm.1	TC0X00002441.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0X00015356.mm.1	NM_008224.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00015356.mm.1	TC0X00002441.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0X00015355.mm.1	NM_008224.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00015355.mm.1	TC0X00002441.mm.1	MTA TC