Mm00480673_g1

• Gene Symbol: Pnkp
• Gene Name: polynucleotide kinase 3'- phosphatase
• Gene Aliases: 1810009G08Rik, PNK
• Chromosome Location: Chr.7: 44857055 - 44862929 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pnkp
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001290764.1	NP_001277693.1	13 - 14	1354		69
	NM_001290766.1	NP_001277695.1	11 - 12	1338		69
	NM_001290767.1	NP_001277696.1	11 - 12	1109		69
	NM_021549.3	NP_067524.2	12 - 13	1446		69
GenBank mRNA	AF129451.1	-	11 - 12	1104		69
	AK049992.1	-	12 - 13	1249		69
	AK159535.1	-	12 - 13	1211		69
	AK159770.1	-	12 - 13	1211		69
	AK160020.1	-	12 - 13	1211		69
	AK160160.1	-	13 - 14	1351		69
	AK172558.1	-	11 - 12	1143		69
	BC047269.1	-	10 - 11	1388		69
	BC057659.1	-	12 - 13	1248	2865792	69

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000820.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pnkp

Gene Ontology Categories:

Process(es)

DNA repair
cellular response to DNA damage stimulus
response to oxidative stress
metabolic process
phosphorylation
dephosphorylation
DNA damage response, detection of DNA damage
nucleotide phosphorylation
DNA 3' dephosphorylation involved in DNA repair
polynucleotide 3' dephosphorylation

Function(s)

nucleotide binding
double-stranded DNA binding
catalytic activity
ATP binding
kinase activity
transferase activity
hydrolase activity
nucleotide kinase activity
polynucleotide 3'-phosphatase activity
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0700006905.mm.1	TC0700000820.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700006905.mm.1	NM_021549.3	Refseq