Mm00488055_m1 Best Coverage

• Gene Symbol: Rpgr
• Gene Name: retinitis pigmentosa GTPase regulator
• Gene Aliases: Rp3h
• Chromosome Location: Chr.X: 10158216 - 10216795 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rpgr
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001177950.1	NP_001171421.1	3 - 4	465		66
	NM_001177951.1	NP_001171422.1	3 - 4	465		66
	NM_001177952.1	NP_001171423.1	3 - 4	459		66
	NM_001177953.1	NP_001171424.1	3 - 4	465		66
	NM_001177954.1	NP_001171425.1	3 - 4	465		66
	NM_011285.2	NP_035415.1	3 - 4	465		66
GenBank mRNA	AF044677.1	-	3 - 4	383		66
	AJ238396.1	-	3 - 4	377		66
	AK017192.1	-	3 - 4	397		66
	AK029864.1	-	3 - 4	591		66
	AK038652.1	-	3 - 4	429		66
	AK081631.1	-	3 - 4	404		66
	AK136298.1	-	3 - 4	396		66
	AK138977.1	-	3 - 4	460		66
	BC012661.1	-	3 - 4	404		66

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0X00003418.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rpgr

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

visual perception
cell projection organization
intraciliary transport
cilium assembly
eye photoreceptor cell development
response to stimulus
retina morphogenesis in camera-type eye
cellular response to light stimulus

Function(s)

guanyl-nucleotide exchange factor activity
protein binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177950.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177950.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177951.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177951.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177952.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177952.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177953.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177953.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177954.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_001177954.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_011285.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	NM_011285.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0X00011796.mm.1	TC0X00003418.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	608106	-	-