Mm00488386_m1

• Gene Symbol: Sox5
• Gene Name: SRY (sex determining region Y)-box 5
• Gene Aliases: A730017D01Rik, AI528773
• Chromosome Location: Chr.6: 143828425 - 144781989 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001113559.2	NP_001107031.2	12 - 13	1826		70
	NM_001243163.1	NP_001230092.1	12 - 13	1718		70
	NM_011444.3	NP_035574.2	13 - 14	1970		70
GenBank mRNA	AB006330.1	-	13 - 14	1882		70
	AJ010604.1	-	12 - 13	1708		70
	AK160154.1	-	6 - 7	784		70
	BC110478.2	-	12 - 13	1710	40047865	70
	KF793916.1	-	13 - 14	1671		70
	X65657.1	-	6 - 7	755		70
	X65658.1	-	1 - 2	72		70

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600003397.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox5

Gene Ontology Categories:

Process(es)

in utero embryonic development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
central nervous system neuron differentiation
positive regulation of chondrocyte differentiation
cell fate commitment
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
oligodendrocyte differentiation
cartilage development
regulation of timing of neuron differentiation
positive regulation of cartilage development
cellular response to transforming growth factor beta stimulus
positive regulation of mesenchymal stem cell differentiation

Function(s)

RNA polymerase II transcription factor activity, sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	TC0600003397.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_001113559.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_001113559.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_001243163.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_001243163.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_011444.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026776.mm.1	NM_011444.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	TC0600003397.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_001113559.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_001113559.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_001243163.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_001243163.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_011444.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026775.mm.1	NM_011444.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	TC0600003397.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_001113559.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_001113559.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_001243163.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_001243163.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_011444.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600026777.mm.1	NM_011444.3	Refseq