Mm00488399_m1

• Gene Symbol: Sox6
• Gene Name: SRY (sex determining region Y)-box 6
• Gene Aliases: AI987981, SOX-LZ
• Chromosome Location: Chr.7: 115470872 - 116040484 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001025559.3	NP_001020730.1	13 - 14	1753		67
	NM_001025560.2	NP_001020731.1	13 - 14	1867		67
	NM_001277326.1	NP_001264255.1	13 - 14	1848		67
	NM_001277327.1	NP_001264256.1	12 - 13	1908		67
	NM_001277328.1	NP_001264257.1	11 - 12	1613		67
	NM_011445.4	NP_035575.1	14 - 15	1901		67
GenBank mRNA	AJ010605.1	-	2 - 3	180		67
	AK029696.1	-	11 - 12	1541		67
	AK030713.1	-	13 - 14	1868		67
	AK132409.1	-	13 - 14	1814		67
	BC067407.1	-	12 - 13	1905	30094413	67
	D61689.1	-	11 - 12	1609		67
	U32614.1	-	14 - 15	1905		67

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700004148.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox6

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
in utero embryonic development
transcription, DNA-templated
regulation of transcription, DNA-templated
multicellular organism development
post-embryonic development
regulation of gene expression
gene silencing
oligodendrocyte cell fate specification
hemopoiesis
erythrocyte differentiation
positive regulation of chondrocyte differentiation
muscle cell differentiation
cell fate commitment
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
astrocyte differentiation
oligodendrocyte differentiation
erythrocyte development
cartilage development
cardiac muscle cell differentiation
positive regulation of cartilage development
cellular response to transforming growth factor beta stimulus
positive regulation of mesenchymal stem cell differentiation

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_001025559.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_001025560.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_001277326.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_001277327.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_001277328.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	NM_011445.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0700034360.mm.1	TC0700004148.mm.1	MTA TC