Mm00488460_m1 Best Coverage

• Gene Symbol: Stau1
• Gene Name: staufen (RNA binding protein) homolog 1 (Drosophila)
• Gene Aliases: 5830401L18Rik, AW549911, C85792, Stau
• Chromosome Location: Chr.2: 166947549 - 166996299 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Stau1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109905.2	NP_001103375.1	2 - 3	407		59
	NM_001109906.2	NP_001103376.1	2 - 3	407		59
	NM_001291160.1	NP_001278089.1	2 - 3	407		59
	NM_011490.4	NP_035620.1	2 - 3	407		59
	NR_111895.1		1 - 2	141		59
GenBank mRNA	AF061942.1	-	2 - 3	407		59
	AF395842.1	-	1 - 2	128		59
	AK005002.2	-	2 - 3	348		59
	AK139532.1	-	2 - 3	354		59
	AK145826.1	-	2 - 3	374		59
	AK151835.1	-	2 - 3	213		59
	AK152269.1	-	2 - 3	219		59
	AK152744.1	-	2 - 3	213		59
	AK159602.1	-	2 - 3	324		59
	AK159781.1	-	2 - 3	377		59
	AK160979.1	-	2 - 3	348		59
	AK218209.1	-	2 - 3	168		59
	AY391773.1	-	1 - 2	140		59
	BC012959.1	-	2 - 3	371	4188394	59
	BC082277.1	-	2 - 3	344		59

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0200005179.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Stau1

Gene Ontology Categories:

Process(es)

intracellular mRNA localization
positive regulation of viral genome replication
positive regulation by virus of viral protein levels in host cell

Function(s)

RNA binding
double-stranded RNA binding
protein binding
protein phosphatase 1 binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0200044315.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044315.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044315.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044315.mm.1	TC0200005179.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200044323.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044323.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044323.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044323.mm.1	TC0200005179.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200044322.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044322.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044322.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044322.mm.1	TC0200005179.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200044316.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044316.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044316.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044316.mm.1	TC0200005179.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200044324.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044324.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044324.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044324.mm.1	TC0200005179.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0200044317.mm.1	NM_001109905.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044317.mm.1	NM_001109906.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044317.mm.1	NM_011490.4	Refseq
Affymetrix Mouse Clariom S Array	PSR0200044317.mm.1	TC0200005179.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	729611	-	-