Mm00495576_g1

Gene Symbol:

Tdg Gm9855

Gene Name:

thymine DNA glycosylase

thymine DNA glycosylase pseudogene

Gene Aliases:

E130317C12Rik, JZA-3, Jza1

ENSMUSG00000051559

Chromosome Location:

Chr.10: 82629247 - 82650494 on Build GRCm38

Chromosome Location:

Chr.10: 42052558 - 42055453 on Build GRCm38

Species:

Mouse

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Tdg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_011561.2	NP_035691.2	3 - 4	519		80
	NM_172552.3	NP_766140.2	3 - 4	618		80
GenBank mRNA	AF102875.1	-	1 - 2	191		80
	AK053870.1	-	3 - 4	546		80
	AK164090.1	-	3 - 4	479		80
	AK164643.1	-	3 - 4	586		80
	AK169768.1	-	3 - 4	542		80
	BC010315.1	-	3 - 4	508	3595866	80
	BC085470.1	-	3 - 4	565	6416434	80
	BC085471.1	-	3 - 4	589	6816716	80

Gene Symbol: Gm9855
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_037190.1		1	515		80
GenBank mRNA	AF069519.1	-	1	476		80
	AK089915.1	-	1	519		80

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1000000928.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tdg
Click here to find siRNAs for Gene Gm9855

Panther Classification:

Molecular Function -

DNA metabolism protein, DNA glycosylase, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
DNA repair
base-excision repair
mismatch repair
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
cellular response to DNA damage stimulus
metabolic process
embryo development
chromatin modification
negative regulation of protein binding
negative regulation of chromatin binding
regulation of gene expression, epigenetic
DNA demethylation

Function(s)

RNA polymerase II transcription cofactor activity
double-stranded DNA binding
protein kinase C binding
protein binding
transcription factor binding
pyrimidine-specific mismatch base pair DNA N-glycosylase activity
hydrolase activity
hydrolase activity, acting on glycosyl bonds
hydrolase activity, hydrolyzing N-glycosyl compounds
DNA N-glycosylase activity
protein domain specific binding
mismatched DNA binding
SUMO binding
protein homodimerization activity
structure-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	NM_011561.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	NM_011561.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	NM_172552.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	NM_172552.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	NR_037190.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007389.mm.1	TC1000000928.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	NM_011561.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	NM_011561.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	NM_172552.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	NM_172552.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	NR_037190.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007386.mm.1	TC1000000928.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	NM_011561.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	NM_011561.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	NM_172552.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	NM_172552.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	NR_037190.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000007388.mm.1	TC1000000928.mm.1	MTA TC